Showing : genomicinteractions • reset
1
vote
0
replies
412
views
subsetByOverlaps in GenomicInteractions object doesn't work properly?
InteractionSet subsetByOverlaps GenomicInteractions
10 months ago LaureTomas ▴ 10
0
votes
0
replies
610
views
Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions Basic4Cseq DNASeq GenomicFiles
2.8 years ago koushik • 0
1
vote
7
replies
1.6k
views
problem recasting InteractionSet into a DGEList
diffHic GenomicInteractions edgeR HiC cooler
updated 3.7 years ago by ★ 28k • written 3.7 years ago by ▴ 30
0
votes
5
replies
1.0k
views
GenomicInteractions duplicate annotations
duplicate GenomicInteractions
4.0 years ago dogancan • 0
0
votes
4
replies
807
views
duplicated interactions using package GenomicInteractions
GenomicInteractions
4.1 years ago chang.jiaming • 0
0
votes
4
replies
1.1k
views
col.interactions.types for gviz InteractionTrack from the GenomicInteractions
GenomicInteractions gviz
updated 4.2 years ago by ▴ 140 • written 4.2 years ago by ▴ 30
2
votes
3
replies
771
views
Export annotation from GenomicInteractions package
genomicInteractions annotation
updated 4.9 years ago by ▴ 140 • written 4.9 years ago by • 0
0
votes
3
replies
1.4k
views
Gviz (GenomicInteractions) arc height and boundaries
GenomicInteractions Gviz
updated 5.0 years ago by ▴ 140 • written 5.0 years ago by ▴ 10
0
votes
2
replies
1.2k
views
Visualizing 4c-seq as arc
genomicinteractions gviz interactionset
updated 5.4 years ago by ▴ 140 • written 5.4 years ago by • 0
2
votes
5
replies
1.3k
views
plotCisTrans function in GenomicInteractions package
genomicinteractions
6.6 years ago sarvesh.nikumbh ▴ 10
5
votes
4
replies
2.5k
views
Plotting genomic interactions in Gviz
gviz genomicinteractions
8.1 years ago enricoferrero ▴ 660
0
votes
2
replies
1.1k
views
GenomicInteractions read in bedpe error
genomicinteractions GRanges
updated 8.2 years ago by ▴ 140 • written 8.2 years ago by ▴ 190
3
votes
5
replies
2.0k
views
GenomicInteractions package read in meta data file
GenomicInteractions
updated 8.3 years ago by ▴ 40 • written 8.3 years ago by ▴ 190
13 results • Page 1 of 1
Recent ...
Replies
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
Awards • All
Popular Question to gene_bioconductor ▴ 10
Popular Question to rohitsatyam102 ▴ 20
Popular Question to shepherl 3.9k
Popular Question to siajunren • 0
Scholar to Rory Stark ★ 5.2k
Locations • All
WEHI, Melbourne, Australia, just now
France, 4 minutes ago
St Louis, MO, 2 hours ago
United States, 3 hours ago
United States, 4 hours ago
Traffic: 582 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6