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Comment: NUPOP usage
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Tikaaaq2c
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To use the NuPoP application for nucleosome positioning prediction, you first need to provide a DNA sequence in FASTA format. If you are us…
Comment: Chip Seq Analysis of RNA Polymerase 2
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Tikaaaq2c
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Without proper scaling or an enrichment check , Pol 2 peaks can appear flat against the background. If the data remains noisy, you might w…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
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Tikaaaq2c
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Organizing complex transcripts requires the same discipline as managing a digital library on a learning platform. Many researchers use a [S…
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shepherl
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We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA
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No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
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