Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
gff3
•
reset
1
vote
2
replies
1.9k
views
DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq
python
gtf
gff3
annotation
4.8 years ago
Raito92
▴ 60
2
votes
2
replies
2.3k
views
Filtering GFF3 file
annotation
gff3
gff
genome
updated 5.5 years ago by
Michael Lawrence
★ 11k • written 5.5 years ago by
mictadlo
▴ 10
0
votes
0
replies
1.2k
views
I need to measure distance of PAR-CLIP data to RNA regions
parclip
bedtools
bed files
gff3
7.1 years ago
linuxborg2
• 0
2
votes
2
replies
5.1k
views
How to prepare TxDb object using makeTxDbFromGFF with polycistronic transcripts?
txdb
gff3
polycistronic transcript
7.3 years ago
Piotr Gawronski
• 0
9
votes
3
replies
3.6k
views
Importing Gene Symbols with makeTxDbFromGFF
GenomicFeatures
GFF3
updated 7.9 years ago by
Valerie Obenchain
★ 6.8k • written 7.9 years ago by
Dario Strbenac
★ 1.6k
2
votes
0
replies
3.8k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
9.5 years ago
Sonali Arora
▴ 390
6 results • Page
1 of 1
Recent ...
Replies
Comment: How to formulate 2 factor nested design in DESeq2
by
Mariane
• 0
Hi JK Kim, I'm having a problem similar to the one you reported. Could you please tell me how you solved this problem? Thanks
Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Thank you
Answer: Pathview visualisation not including positive log2 fold changes
by
James W. MacDonald
68k
Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
Comment: Differential variance analysis - can i use deseq2
by
Marwan
• 0
Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…
Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Votes
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Awards
• All
Popular Question
to
user_bioinfo
• 0
Scholar
to
Michael Love
43k
Popular Question
to
daniel.carbajo
• 0
Popular Question
to
xiaofeiwang198266
• 0
Popular Question
to
maltethodberg
▴ 180
Locations
• All
India,
18 minutes ago
The city by the bay,
39 minutes ago
WEHI, Melbourne, Australia,
1 hour ago
Seattle, WA, United States,
2 hours ago
India,
5 hours ago
Traffic: 633 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6