Bioconductor Gff3

Showing : gff3 • reset

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dexseq python gtf gff3 annotation

5.6 years ago Raito92 ▴ 60

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2.7k

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annotation gff3 gff genome

updated 6.2 years ago by Michael Lawrence ★ 11k • written 6.3 years ago by mictadlo ▴ 10

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parclip bedtools bed files gff3

7.9 years ago linuxborg2 • 0

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5.4k

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txdb gff3 polycistronic transcript

8.1 years ago Piotr Gawronski • 0

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4.0k

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GenomicFeatures GFF3

updated 8.7 years ago by Valerie Obenchain ★ 6.8k • written 8.7 years ago by Dario Strbenac ★ 1.6k

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4.4k

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AnnotationHub Gencode GFF3 FASTA News

10.3 years ago Sonali Arora ▴ 390

6 results • Page 1 of 1

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Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

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Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Commentator to sina.nassiri ▴ 130