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gff3
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq
python
gtf
gff3
annotation
5.7 years ago
Raito92
▴ 60
2
votes
2
replies
2.8k
views
Filtering GFF3 file
annotation
gff3
gff
genome
updated 6.4 years ago by
Michael Lawrence
★ 11k • written 6.4 years ago by
mictadlo
▴ 10
0
votes
0
replies
1.4k
views
I need to measure distance of PAR-CLIP data to RNA regions
parclip
bedtools
bed files
gff3
8.0 years ago
linuxborg2
• 0
2
votes
2
replies
5.4k
views
How to prepare TxDb object using makeTxDbFromGFF with polycistronic transcripts?
txdb
gff3
polycistronic transcript
8.2 years ago
Piotr Gawronski
• 0
9
votes
3
replies
4.1k
views
Importing Gene Symbols with makeTxDbFromGFF
GenomicFeatures
GFF3
updated 8.8 years ago by
Valerie Obenchain
★ 6.8k • written 8.8 years ago by
Dario Strbenac
★ 1.6k
2
votes
0
replies
4.6k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
10.4 years ago
Sonali Arora
▴ 390
6 results • Page
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Comment: Joining different datasets and analyzing using the group-specific condition effe
by
jason.chai
• 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
Comment: Questions about bacon QC and correction on EWAS results
by
sup0903
• 0
This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Comment: Ensembl site unresponsive via biomaRt
by
sebastianenewell
• 0
> I think this is an unrelated issue. The original post includes the > message Error: 'curl_parse_url' is not an exported object from > 'na…
Comment: Development of MSstat workflow to analyze DIA time series data
by
Gordon Smyth
53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR
by
Gordon Smyth
53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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