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goexpress
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0
votes
2
replies
2.7k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
2.3 years ago
Chruut
• 0
2
votes
8
replies
1.6k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 2.4 years ago by
kevin.rue
▴ 350 • written 2.4 years ago by
grolo
• 0
0
votes
0
replies
598
views
GOexpress pvalue and gene sets
GOexpress
3.1 years ago
jms2520
▴ 10
0
votes
4
replies
1.4k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 5.1 years ago by
kevin.rue
▴ 350 • written 5.1 years ago by
atorson
• 0
1
vote
2
replies
1.6k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 5.4 years ago by
kevin.rue
▴ 350 • written 5.4 years ago by
Antonio Campos
• 0
0
votes
2
replies
1.3k
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
5.5 years ago
rezashiralmohammad
• 0
2
votes
4
replies
1.6k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
7.2 years ago
sina.zboron
• 0
9
votes
8
replies
4.8k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
8.0 years ago
Bogdan
▴ 670
5
votes
4
replies
1.9k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 8.2 years ago by
kevin.rue
▴ 350 • written 8.2 years ago by
mforde84
▴ 20
0
votes
3
replies
4.3k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 8.8 years ago by
kevin.rue
▴ 350 • written 8.8 years ago by
Darya Vanichkina
▴ 130
2
votes
6
replies
3.0k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 9.0 years ago by
kevin.rue
▴ 350 • written 9.0 years ago by
martin.hoelzer
▴ 20
3
votes
2
replies
1.6k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 9.4 years ago by
kevin.rue
▴ 350 • written 9.4 years ago by
willj
▴ 30
3
votes
6
replies
2.1k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 9.4 years ago by
kevin.rue
▴ 350 • written 9.4 years ago by
kcamnairb
▴ 10
6
votes
7
replies
4.3k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
9.4 years ago
martin.hoelzer
▴ 20
14 results • Page
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by
earntodiesaz
• 0
I'm delighted to have the chance to engage in conversation with your blog; I'm looking forward to reading more posts that can be relied upo…
Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana
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earntodiesaz
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To be honest with you, I must say that it was an exceptionally good post. Writing it down and reading it during my lunch break was a very e…
Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
by
Gordon Smyth
52k
I generally recommend `block=individual` for unbalanced designs, to recover information from incomplete blocks. I would only be disuaded fr…
Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
by
Devin
▴ 10
Thank you, Gordon, for your responses to all of my questions. For analysis A), in the case when a patient has either a missing timepoint or…
Comment: Using TPM from tximport of Salmon output for singscore
by
Kent
• 0
Thanks Michael. Just out of curiosity, would you also use the same technique for things like clustering analysis or when looking at the abn…
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Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
Answer: Using TPM from tximport of Salmon output for singscore
Comment: Using TPM from tximport of Salmon output for singscore
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