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goexpress
•
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0
votes
2
replies
3.4k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
3.2 years ago
Chruut
• 0
2
votes
8
replies
2.1k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 3.2 years ago by
kevin.rue
▴ 350 • written 3.2 years ago by
grolo
• 0
0
votes
0
replies
738
views
GOexpress pvalue and gene sets
GOexpress
3.9 years ago
jms2520
▴ 10
0
votes
4
replies
1.7k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 6.0 years ago by
kevin.rue
▴ 350 • written 6.0 years ago by
atorson
• 0
1
vote
2
replies
2.0k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 6.3 years ago by
kevin.rue
▴ 350 • written 6.3 years ago by
Antonio Campos
• 0
0
votes
2
replies
1.5k
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
6.4 years ago
rezashiralmohammad
• 0
2
votes
4
replies
1.9k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
8.0 years ago
sina.zboron
• 0
9
votes
8
replies
5.6k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
8.9 years ago
Bogdan
▴ 670
5
votes
4
replies
2.2k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 9.0 years ago by
kevin.rue
▴ 350 • written 9.0 years ago by
mforde84
▴ 20
0
votes
3
replies
4.7k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 9.7 years ago by
kevin.rue
▴ 350 • written 9.7 years ago by
Darya Vanichkina
▴ 130
2
votes
6
replies
3.3k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 9.9 years ago by
kevin.rue
▴ 350 • written 9.9 years ago by
martin.hoelzer
▴ 20
3
votes
2
replies
1.8k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 10.2 years ago by
kevin.rue
▴ 350 • written 10.2 years ago by
willj
▴ 30
3
votes
6
replies
2.4k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 10.2 years ago by
kevin.rue
▴ 350 • written 10.2 years ago by
kcamnairb
▴ 10
6
votes
7
replies
4.8k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
10.3 years ago
martin.hoelzer
▴ 20
14 results • Page
1 of 1
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Replies
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
jason.chai
• 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
Comment: Questions about bacon QC and correction on EWAS results
by
sup0903
• 0
This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Comment: Ensembl site unresponsive via biomaRt
by
sebastianenewell
• 0
> I think this is an unrelated issue. The original post includes the > message Error: 'curl_parse_url' is not an exported object from > 'na…
Comment: Development of MSstat workflow to analyze DIA time series data
by
Gordon Smyth
53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR
by
Gordon Smyth
53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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