Bioconductor Goexpress

Showing : goexpress • reset

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4.8k

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goexpress gopro

8.0 years ago Bogdan ▴ 670

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4.3k

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topgo biomart gene ontology goexpress pathway analysis

updated 8.8 years ago by kevin.rue ▴ 350 • written 8.8 years ago by Darya Vanichkina ▴ 130

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4.3k

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GOexpress deseq2 expressionset

9.4 years ago martin.hoelzer ▴ 20

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3.0k

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goexpress

updated 9.0 years ago by kevin.rue ▴ 350 • written 9.0 years ago by martin.hoelzer ▴ 20

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GOexpress GO.db GOSemSim

2.3 years ago Chruut • 0

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2.1k

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software error goexpress

updated 9.4 years ago by kevin.rue ▴ 350 • written 9.4 years ago by kcamnairb ▴ 10

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1.9k

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gene ontology goexpress

updated 8.2 years ago by kevin.rue ▴ 350 • written 8.2 years ago by mforde84 ▴ 20

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1.6k

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goexpress

updated 9.4 years ago by kevin.rue ▴ 350 • written 9.4 years ago by willj ▴ 30

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GOexpress heatmap gene ontology plot

updated 5.4 years ago by kevin.rue ▴ 350 • written 5.4 years ago by Antonio Campos • 0

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1.6k

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GOexpress

updated 2.4 years ago by kevin.rue ▴ 350 • written 2.4 years ago by grolo • 0

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1.6k

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GOexpress subset_scores <0 rows>

7.2 years ago sina.zboron • 0

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1.4k

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RNA-seq transcriptomics gene ontology gene expression GOexpress

updated 5.1 years ago by kevin.rue ▴ 350 • written 5.1 years ago by atorson • 0

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1.3k

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goexpress ExpressionSet GO_analyse

5.5 years ago rezashiralmohammad • 0

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598

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GOexpress

3.1 years ago jms2520 ▴ 10

14 results • Page 1 of 1

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Comment: Issue with DECIPHER::IdTaxa by Daniel • 0

The issue is still there and it is a real pain. ape and ade4 are used by packages like Phyloseq. There should be a way to avoid these inc…

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Gordon Smyth 52k

I generally recommend `block=individual` for unbalanced designs, to recover information from incomplete blocks. I would only be disuaded fr…

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Devin ▴ 10

Thank you, Gordon, for your responses to all of my questions. For analysis A), in the case when a patient has either a missing timepoint or…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thanks Michael. Just out of curiosity, would you also use the same technique for things like clustering analysis or when looking at the abn…

Comment: GAGE kegg.gsets() self-signed certificate error by Lucas • 0

Hello, I ended up solving the issue by using the first strategy: Disable the SSL certificate Verification. I used the following code to …

Votes

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

Answer: Using TPM from tximport of Salmon output for singscore

Comment: Using TPM from tximport of Salmon output for singscore

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