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Agi4x44PreProcess - Replicated genes
Annotation GUI probe Agi4x44PreProcess Annotation GUI probe Agi4x44PreProcess
updated 15.9 years ago by ★ 1.3k • written 15.9 years ago by ▴ 460
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967
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snapCGH - could not find function "readPositionalInfo"
GUI snapCGH GUI snapCGH
16.0 years ago Kristian Almstrup ▴ 10
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1.1k
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build.mappings() from Agi4x44PreProcess is not helping me today
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16.3 years ago Massimo Pinto ▴ 390
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3
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1.0k
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Bioconductor 2.4 is released
GUI GUI
updated 16.3 years ago by ▴ 10 • written 16.3 years ago by ▴ 10
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1
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887
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GUI designing
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updated 16.7 years ago by ▴ 620 • written 16.7 years ago by ▴ 10
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6
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2.0k
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flowCore - cloud() and lapply
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updated 16.7 years ago by ▴ 340 • written 16.7 years ago by ▴ 120
0
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2
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1.9k
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Help with loading newly created custom annotation db into R session
Annotation GO GUI zebrafish probe Annotation GO GUI zebrafish probe
updated 16.8 years ago by 68k • written 16.8 years ago by ▴ 300
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0
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1.5k
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Loading problem with Rlibstree and microRNA packages on MacOS X 10.4
GUI Cancer Breast hgu133plus2 PROcess rtracklayer microRNA GUI Cancer Breast hgu133plus2
16.9 years ago Steven McKinney ▴ 310
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1
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1.5k
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asMatrixWeights: weights of unexpected shape
GUI limma limmaGUI GUI limma limmaGUI
updated 17.0 years ago by ▴ 90 • written 17.0 years ago by 53k
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3
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1.7k
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duplicate correlation of 4 "within array replicates" limmaGUI
GUI limma limmaGUI microRNA GUI limma limmaGUI microRNA
17.0 years ago Gordon Smyth 53k
0
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0
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976
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asMatrixWeights (weights, dim(M)), weigths of unexpected shape
GUI limma GUI limma
17.0 years ago Christine Voellenkle ▴ 90
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0
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851
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duplicate correlation of 4 "within array replicates" limma gui
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17.1 years ago Naomi Altman ★ 6.0k
0
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0
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948
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duplicate correlation of 4 "within array replicates" limma gui
GUI limma microRNA GUI limma microRNA
17.1 years ago Christine Voellenkle ▴ 90
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0
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1.2k
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DAnTE: Statistical Tool using R and R(D)COM
Proteomics Normalization GUI Proteomics Normalization GUI
17.3 years ago Ashoka Polpitiya ▴ 10
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0
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1.4k
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Problem with oneChannelGUI
GUI Biobase affy affyio oneChannelGUI preprocessCore GUI Biobase affy affyio
17.3 years ago Luc Vallieres ▴ 20
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20
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3.9k
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affy won't load
GUI affy GUI affy
17.4 years ago jason smith ▴ 50
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1
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885
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problem upgrading limma on Windows Vista
GUI limma GUI limma
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 50
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3
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1.5k
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R crashes after image array plots hgu133plus2 in R2.6.0
GUI hgu133plus2 affy limma affylmGUI GUI hgu133plus2 affy limma affylmGUI
updated 18.0 years ago by 25k • written 18.0 years ago by ★ 2.0k
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2
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1.2k
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newbie Q about object identity
GUI Biobase genefilter GUI Biobase genefilter
updated 18.1 years ago by 25k • written 18.1 years ago by ▴ 20
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1
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1.6k
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Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
18.1 years ago Hervé Pagès 16k
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1
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863
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Error in the Oligo package with pd.mapping50k.xba240
GUI oligo GUI oligo
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ▴ 40
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3
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1.7k
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limma: print-tip loess and empty spots
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18.4 years ago Gordon Smyth 53k
0
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3
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2.0k
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limma: print-tip loess and empty spots
Transcription Normalization GUI limma Transcription Normalization GUI limma
updated 18.4 years ago by ▴ 50 • written 18.4 years ago by 53k
0
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0
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1.4k
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BioC 2.0 is available
SNP Microarray Genetics Annotation Visualization Bayesian Survival GUI Cancer adme16cod
18.5 years ago Seth Falcon ★ 7.4k
0
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625
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19.1 years ago 丁明全 ▴ 10
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maQualityPlots on Mac
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updated 19.2 years ago by ▴ 300 • written 19.2 years ago by 16k
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2
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1.5k
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Installation Problems
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19.2 years ago McGee, Monnie ▴ 300
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1.4k
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Software Engineer Position at the EBI, Cambridge UK
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Errors using biocLite on Apple OS X
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19.3 years ago Steven McKinney ▴ 310
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limma citations [was LimmaGUI for illumina data]
Annotation GUI Kidney limma affylmGUI limmaGUI Annotation GUI Kidney limma affylmGUI
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0
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LimmaGUI for illumina data
GUI affy limma affylmGUI limmaGUI beadarray GUI affy limma affylmGUI limmaGUI beadarray
19.4 years ago Mark Dunning ▴ 320
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0
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1.2k
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LimmaGUI for illumina data
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19.4 years ago Roy Williams ▴ 10
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1.8k
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New Quantian releases with almost all of CRAN / BioC
Coverage Visualization GUI Coverage Visualization GUI
19.7 years ago Dirk Eddelbuettel ▴ 80
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Database for Microarray Data - request for user stories
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0
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Database for Microarray Data - request for user stories
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updated 19.9 years ago by ▴ 50 • written 19.9 years ago by ▴ 320
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1.3k
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Re-scaling MA plot Y axis in LimmaGUI?
GUI limma limmaGUI GUI limma limmaGUI
19.9 years ago J.delasHeras@ed.ac.uk ★ 1.9k
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3
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attributes of SAM files
GUI siggenes GUI siggenes
updated 20.0 years ago by 68k • written 20.0 years ago by ▴ 100
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0
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1.1k
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installing Bioconductor on Mac OS tiger
GUI GUI
20.2 years ago Kay Schneitz ▴ 10
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0
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1.1k
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affycomp: info.txt is Ok, new error message
GUI affycomp GUI affycomp
20.4 years ago Mohammad Esad-Djou ▴ 520
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1
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1.4k
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FYI from apple employee RE: [R] Memory error in Mac OS X
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updated 20.5 years ago by ▴ 430 • written 20.5 years ago by ▴ 10
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7
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1.7k
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bioconductor and ESS
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updated 20.6 years ago by ▴ 360 • written 20.6 years ago by ▴ 30
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updated 20.7 years ago by ▴ 430 • written 20.7 years ago by ▴ 10
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1
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FYI from apple employee RE: [R] Memory error in Mac OS X Aqua GUI v1.01 with cluster
GUI trigger GUI trigger
updated 20.7 years ago by ▴ 430 • written 20.7 years ago by ▴ 50
0
votes
2
replies
1.5k
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Memory error in Mac OS X Aqua GUI v1.01 with cluster package functions
GUI trigger GUI trigger
updated 20.7 years ago by 68k • written 20.7 years ago by ▴ 50
0
votes
3
replies
1.4k
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getting closer on YEAST 2.0 annotation...
Annotation GUI Yeast probe Annotation GUI Yeast probe
updated 20.7 years ago by ★ 2.9k • written 20.7 years ago by ▴ 320
0
votes
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Installing Packages from Bioconductor: Error
GUI GUI
updated 20.9 years ago by ▴ 270 • written 20.9 years ago by ▴ 20
0
votes
1
reply
853
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Problem with limma gui and sma
GUI limma GUI limma
updated 21.0 years ago by 68k • written 21.0 years ago by ▴ 30
0
votes
0
replies
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Questions about input data with limma GUI
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21.2 years ago hélène régé ▴ 10
0
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1
reply
831
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Top 50 Candidate genes: "wrong" pValues and B results!
GUI limma GUI limma
updated 21.3 years ago by 53k • written 21.3 years ago by ▴ 30
0
votes
0
replies
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Top 50 Candidate genes: "wrong" pValues and B results!
Microarray GUI Cancer limma Microarray GUI Cancer limma
21.3 years ago James W. MacDonald 68k
117 results • Page 2 of 3
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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