Showing : gui • reset
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1.3k
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Agi4x44PreProcess - Replicated genes
Annotation GUI probe Agi4x44PreProcess Annotation GUI probe Agi4x44PreProcess
updated 16.1 years ago by ★ 1.3k • written 16.1 years ago by ▴ 460
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0
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988
views
snapCGH - could not find function "readPositionalInfo"
GUI snapCGH GUI snapCGH
16.2 years ago Kristian Almstrup ▴ 10
0
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0
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1.1k
views
build.mappings() from Agi4x44PreProcess is not helping me today
GO GUI hgug4112a limma PROcess Agi4x44PreProcess GO GUI hgug4112a limma PROcess
16.4 years ago Massimo Pinto ▴ 390
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3
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1.1k
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Bioconductor 2.4 is released
GUI GUI
updated 16.4 years ago by ▴ 10 • written 16.4 years ago by ▴ 10
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1
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911
views
GUI designing
GUI GUI
updated 16.9 years ago by ▴ 620 • written 16.9 years ago by ▴ 10
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6
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2.1k
views
flowCore - cloud() and lapply
GUI GUI
updated 16.9 years ago by ▴ 340 • written 16.9 years ago by ▴ 120
0
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2
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2.0k
views
Help with loading newly created custom annotation db into R session
Annotation GO GUI zebrafish probe Annotation GO GUI zebrafish probe
updated 17.0 years ago by 68k • written 17.0 years ago by ▴ 300
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0
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1.5k
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Loading problem with Rlibstree and microRNA packages on MacOS X 10.4
GUI Cancer Breast hgu133plus2 PROcess rtracklayer microRNA GUI Cancer Breast hgu133plus2
17.1 years ago Steven McKinney ▴ 310
0
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1
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1.5k
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asMatrixWeights: weights of unexpected shape
GUI limma limmaGUI GUI limma limmaGUI
updated 17.2 years ago by ▴ 90 • written 17.2 years ago by 53k
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3
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1.8k
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duplicate correlation of 4 "within array replicates" limmaGUI
GUI limma limmaGUI microRNA GUI limma limmaGUI microRNA
17.2 years ago Gordon Smyth 53k
0
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0
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990
views
asMatrixWeights (weights, dim(M)), weigths of unexpected shape
GUI limma GUI limma
17.2 years ago Christine Voellenkle ▴ 90
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0
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874
views
duplicate correlation of 4 "within array replicates" limma gui
GUI limma microRNA GUI limma microRNA
17.2 years ago Naomi Altman ★ 6.0k
0
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0
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972
views
duplicate correlation of 4 "within array replicates" limma gui
GUI limma microRNA GUI limma microRNA
17.2 years ago Christine Voellenkle ▴ 90
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0
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1.3k
views
DAnTE: Statistical Tool using R and R(D)COM
Proteomics Normalization GUI Proteomics Normalization GUI
17.4 years ago Ashoka Polpitiya ▴ 10
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0
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1.4k
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Problem with oneChannelGUI
GUI Biobase affy affyio oneChannelGUI preprocessCore GUI Biobase affy affyio
17.5 years ago Luc Vallieres ▴ 20
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20
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4.0k
views
affy won't load
GUI affy GUI affy
17.5 years ago jason smith ▴ 50
0
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1
reply
910
views
problem upgrading limma on Windows Vista
GUI limma GUI limma
updated 17.8 years ago by 68k • written 17.8 years ago by ▴ 50
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3
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1.5k
views
R crashes after image array plots hgu133plus2 in R2.6.0
GUI hgu133plus2 affy limma affylmGUI GUI hgu133plus2 affy limma affylmGUI
updated 18.1 years ago by 25k • written 18.1 years ago by ★ 2.0k
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2
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1.3k
views
newbie Q about object identity
GUI Biobase genefilter GUI Biobase genefilter
updated 18.2 years ago by 25k • written 18.2 years ago by ▴ 20
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1
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1.7k
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Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
18.2 years ago Hervé Pagès 16k
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1
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881
views
Error in the Oligo package with pd.mapping50k.xba240
GUI oligo GUI oligo
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ▴ 40
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3
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1.7k
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limma: print-tip loess and empty spots
Normalization GO GUI limma limmaGUI Normalization GO GUI limma limmaGUI
18.6 years ago Gordon Smyth 53k
0
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3
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2.1k
views
limma: print-tip loess and empty spots
Transcription Normalization GUI limma Transcription Normalization GUI limma
updated 18.6 years ago by ▴ 50 • written 18.6 years ago by 53k
0
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0
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1.4k
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BioC 2.0 is available
SNP Microarray Genetics Annotation Visualization Bayesian Survival GUI Cancer adme16cod
18.7 years ago Seth Falcon ★ 7.4k
0
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640
views
CDF and annotation package for populus
Microarray GUI cdf affy Microarray GUI cdf affy
19.2 years ago 丁明全 ▴ 10
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3
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1.7k
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maQualityPlots on Mac
GUI arrayQuality marray GUI arrayQuality marray
updated 19.3 years ago by ▴ 300 • written 19.3 years ago by 16k
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2
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1.6k
views
Installation Problems
GUI GUI
19.3 years ago McGee, Monnie ▴ 300
0
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0
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1.4k
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Software Engineer Position at the EBI, Cambridge UK
Microarray GUI ArrayExpress Microarray GUI ArrayExpress
19.4 years ago Misha Kapushesky ▴ 130
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5
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2.0k
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Errors using biocLite on Apple OS X
GUI Cancer Breast Biobase GUI Cancer Breast Biobase
19.4 years ago Steven McKinney ▴ 310
0
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0
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1.3k
views
limma citations [was LimmaGUI for illumina data]
Annotation GUI Kidney limma affylmGUI limmaGUI Annotation GUI Kidney limma affylmGUI
19.6 years ago Gordon Smyth 53k
0
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0
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1.3k
views
LimmaGUI for illumina data
GUI affy limma affylmGUI limmaGUI beadarray GUI affy limma affylmGUI limmaGUI beadarray
19.6 years ago Mark Dunning ▴ 320
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0
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1.2k
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LimmaGUI for illumina data
GUI limma affylmGUI limmaGUI GUI limma affylmGUI limmaGUI
19.6 years ago Roy Williams ▴ 10
0
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0
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1.8k
views
New Quantian releases with almost all of CRAN / BioC
Coverage Visualization GUI Coverage Visualization GUI
19.8 years ago Dirk Eddelbuettel ▴ 80
0
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0
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764
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Database for Microarray Data - request for user stories
Microarray Annotation GUI Cancer probe Microarray Annotation GUI Cancer probe
20.0 years ago James W. MacDonald 68k
0
votes
3
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1.5k
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Database for Microarray Data - request for user stories
Microarray Annotation GUI probe Microarray Annotation GUI probe
updated 20.0 years ago by ▴ 50 • written 20.0 years ago by ▴ 320
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1
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1.3k
views
Re-scaling MA plot Y axis in LimmaGUI?
GUI limma limmaGUI GUI limma limmaGUI
20.1 years ago J.delasHeras@ed.ac.uk ★ 1.9k
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3
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attributes of SAM files
GUI siggenes GUI siggenes
updated 20.1 years ago by 68k • written 20.1 years ago by ▴ 100
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0
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1.1k
views
installing Bioconductor on Mac OS tiger
GUI GUI
20.4 years ago Kay Schneitz ▴ 10
0
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0
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1.2k
views
affycomp: info.txt is Ok, new error message
GUI affycomp GUI affycomp
20.6 years ago Mohammad Esad-Djou ▴ 520
0
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1
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1.4k
views
FYI from apple employee RE: [R] Memory error in Mac OS X
GUI trigger GUI trigger
updated 20.7 years ago by ▴ 430 • written 20.7 years ago by ▴ 10
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7
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1.8k
views
bioconductor and ESS
GUI GUI
updated 20.8 years ago by ▴ 360 • written 20.8 years ago by ▴ 30
0
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1
reply
971
views
Installing R
GO GUI PROcess GO GUI PROcess
updated 20.8 years ago by ▴ 430 • written 20.8 years ago by ▴ 10
0
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1
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1.4k
views
FYI from apple employee RE: [R] Memory error in Mac OS X Aqua GUI v1.01 with cluster
GUI trigger GUI trigger
updated 20.8 years ago by ▴ 430 • written 20.8 years ago by ▴ 50
0
votes
2
replies
1.5k
views
Memory error in Mac OS X Aqua GUI v1.01 with cluster package functions
GUI trigger GUI trigger
updated 20.8 years ago by 68k • written 20.8 years ago by ▴ 50
0
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3
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1.5k
views
getting closer on YEAST 2.0 annotation...
Annotation GUI Yeast probe Annotation GUI Yeast probe
updated 20.8 years ago by ★ 2.9k • written 20.8 years ago by ▴ 320
0
votes
3
replies
1.7k
views
Installing Packages from Bioconductor: Error
GUI GUI
updated 21.1 years ago by ▴ 270 • written 21.1 years ago by ▴ 20
0
votes
1
reply
881
views
Problem with limma gui and sma
GUI limma GUI limma
updated 21.1 years ago by 68k • written 21.1 years ago by ▴ 30
0
votes
0
replies
994
views
Questions about input data with limma GUI
Microarray GUI limma Microarray GUI limma
21.4 years ago hélène régé ▴ 10
0
votes
1
reply
851
views
Top 50 Candidate genes: "wrong" pValues and B results!
GUI limma GUI limma
updated 21.4 years ago by 53k • written 21.4 years ago by ▴ 30
0
votes
0
replies
884
views
Top 50 Candidate genes: "wrong" pValues and B results!
Microarray GUI Cancer limma Microarray GUI Cancer limma
21.4 years ago James W. MacDonald 68k
117 results • Page 2 of 3
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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