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gui
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reset
0
votes
2
replies
1.7k
views
"limma" and "Imagene"
GUI
limma
limmaGUI
GUI
limma
limmaGUI
updated 21.6 years ago by
Gordon Smyth
53k • written 21.6 years ago by
Breuk102
▴ 50
0
votes
7
replies
2.4k
views
recipe for installing and using Bioconductor with Mac OS X 10.3 and R GUI 1.9
GUI
GUI
21.8 years ago
Marc Salit
▴ 80
0
votes
0
replies
860
views
recipe for installing and using Bioconductor with Mac OS X 10.3 and R GUI 1.9
GUI
affy
simpleaffy
GUI
affy
simpleaffy
21.8 years ago
Anthony Bosco
▴ 500
0
votes
0
replies
1.4k
views
BioC GUI development
Microarray
Genetics
GUI
affy
limma
affylmGUI
limmaGUI
Microarray
Genetics
GUI
affy
22.1 years ago
James Wettenhall
▴ 1000
0
votes
0
replies
1.1k
views
[BioCBUG] Second user group meeting, 12 Dec 2003 1pm
Microarray
GUI
Microarray
GUI
22.1 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
1.3k
views
Re: Annotate clones Bioconductor beginner
Microarray
Annotation
GUI
annotate
widgetTools
AnnBuilder
Microarray
Annotation
GUI
22.1 years ago
John Zhang
★ 2.9k
0
votes
0
replies
1.0k
views
BioConductor beginner needing to annotate clones
Microarray
GUI
annotate
Microarray
GUI
annotate
22.1 years ago
Law, Annie
▴ 70
0
votes
0
replies
951
views
multtest problem
GUI
multtest
GUI
multtest
22.2 years ago
Josephine.Liang@uchsc.edu
▴ 60
0
votes
0
replies
787
views
Re: Invalid "phenoData" object
GUI
limma
GUI
limma
22.3 years ago
Chris Bye
▴ 30
0
votes
0
replies
1.0k
views
Analysis Interface Projects [was Seeking collaboration for an opensource data analysisinterface project]
Microarray
GUI
affy
limma
Microarray
GUI
affy
limma
22.4 years ago
Gordon Smyth
53k
0
votes
0
replies
1.5k
views
Bioconductor 1.2 Released
Microarray
SAGE
Normalization
GO
GUI
Cancer
cdf
affy
vsn
graph
AnnBuilder
Microarray
22.7 years ago
Jeff Gentry
★ 3.9k
0
votes
0
replies
1.5k
views
Reminder: Release 1.2 on May 28th
Microarray
SAGE
Normalization
GO
GUI
vsn
graph
AnnBuilder
Microarray
SAGE
Normalization
22.7 years ago
Jeff Gentry
★ 3.9k
0
votes
0
replies
893
views
Error in loading bioconductor packages in Rterm and ESS+XEmacs modes
GUI
widgetTools
GUI
widgetTools
22.8 years ago
Dr Mushtaq Ahmed
▴ 20
0
votes
2
replies
1.2k
views
Error in loading bioconductor packages in Rterm and ESS+XEmacs modes
GUI
GUI
updated 22.8 years ago by
Jeff Gentry
★ 3.9k • written 22.8 years ago by
Dr Mushtaq Ahmed
▴ 20
0
votes
2
replies
1.2k
views
affy still not working
GUI
affy
GUI
affy
updated 22.9 years ago by
Jeff Gentry
★ 3.9k • written 22.9 years ago by
mary.e.logue@ucd.ie
▴ 20
0
votes
6
replies
2.1k
views
Re: fileBrowser
GUI
cdf
GUI
cdf
updated 23.8 years ago by
Anthony Rossini
▴ 530 • written 23.8 years ago by
John Zhang
★ 2.9k
0
votes
1
reply
1.4k
views
tkctk widgets
GUI
annotate
affy
GUI
annotate
affy
updated 23.8 years ago by
John Zhang
★ 2.9k • written 23.9 years ago by
rgentleman
★ 5.5k
117 results • Page
3 of 3
Recent ...
Replies
Answer: When to use edgeR or limma
by
Gordon Smyth
53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
I updated the above answer today.
Answer: When to use edgeR or limma
by
James W. MacDonald
68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Noted, thank you very much.
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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