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gviz-package
•
reset
0
votes
0
replies
1.0k
views
Combine UCSC mm9 conservation and hg19 SNP data
gviz-package
7.2 years ago • updated 3.0 years ago
underscore
• 0
4
votes
4
replies
2.7k
views
Gviz: ylim of the AlignmentsTrack
gviz
gviz-package
updated 3.1 years ago by
Pariksheet Nanda
▴ 120 • written 6.3 years ago by
wsciekly.maciek
▴ 10
2
votes
9
replies
2.3k
views
Gviz: decreasing tick resolution
gviz
gviz-package
updated 6.1 years ago by
Robert Ivanek
▴ 750 • written 6.1 years ago by
willbradshaw
• 0
1
vote
2
replies
2.5k
views
Gviz: Setting Up Colour / Fill for AnnotationTrack (strand-dependent colour)
Gviz
gviz-package
GFF
annotationtrack
strand-dependent
updated 6.1 years ago by
Robert Ivanek
▴ 750 • written 6.1 years ago by
JezDD
• 0
0
votes
0
replies
2.4k
views
Gviz: plotting multiple data tracks with the same y-axis limit using Gviz
Gviz
gviz-package
6.4 years ago • updated 6.3 years ago
Mthabisi Moyo
▴ 40
1
vote
1
reply
1.6k
views
How to plot circular genomes with gviz?
gviz
gviz-package
6.4 years ago
Christopher.Rands
▴ 10
2
votes
6
replies
4.2k
views
Gviz change color of groups
gviz-package
gviz
updated 6.5 years ago by
florian.hahne@novartis.com
★ 1.6k • written 6.5 years ago by
gamma.jian
▴ 10
0
votes
1
reply
1.1k
views
Gviz: Histograms in layers instead of stacked ANSWERED!
R
Gviz
gviz-package
6.6 years ago
stephen.williams
▴ 10
0
votes
1
reply
1.1k
views
Gviz: Multiple BiomartGeneRegionTrack one object for Composite plots
gviz
gviz-package
6.6 years ago
stephen.williams
▴ 10
1
vote
0
replies
1.1k
views
Arrange Gviz plotTracks() figure and basic R plot on a canvas
gviz
gviz-package
6.7 years ago
izzy.yichao.cai
▴ 10
2
votes
3
replies
1.1k
views
Gviz: Flip tracks so 5 prime end always on left hand side.
gviz
gviz-package
updated 6.7 years ago by
Robert Ivanek
▴ 750 • written 6.7 years ago by
stephen.williams
▴ 10
0
votes
1
reply
1.2k
views
Error GC content and conservation visualization with Gviz
gviz
gviz-package
updated 6.7 years ago by
Robert Ivanek
▴ 750 • written 6.7 years ago by
h
• 0
0
votes
2
replies
1.4k
views
Gviz: Draw horizontal line on DataTrack
gviz
gviz-package
datatrack
plottracks
6.9 years ago
stephen.williams
▴ 10
0
votes
2
replies
1.6k
views
GViz, different group colours
gviz
gviz-package
updated 7.0 years ago by
James W. MacDonald
67k • written 7.0 years ago by
p1990
• 0
0
votes
4
replies
2.0k
views
Gviz IdeogramTrack fails with Error: failed to load HTTP resource
gviz
gviz-package
rtracklayer
http
7.0 years ago
enricoferrero
▴ 660
3
votes
6
replies
2.2k
views
gviz ideogramTrack connection error
gviz-package
gviz
updated 7.0 years ago by
Robert Ivanek
▴ 750 • written 7.0 years ago by
alperyilmaz
▴ 20
2
votes
0
replies
2.1k
views
Gviz plot combined with multiple ggplot2 plots
gviz
gviz-package
ggplot2
7.4 years ago
christian.aichmueller
▴ 20
0
votes
0
replies
902
views
Gviz Custom ordering of features in Annotationtrack
gviz
gviz-package
7.5 years ago
mnaymik
• 0
1
vote
1
reply
1.6k
views
Selecting only one transcript in BiomartGeneRegionTrack
gviz
gviz-package
R
updated 7.7 years ago by
Jeremy Ng
▴ 180 • written 7.7 years ago by
klim314
• 0
3
votes
2
replies
2.0k
views
Gviz AnnotationTrack id above feature
gviz-package
gviz
annotation
updated 7.8 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.8 years ago by
bruce.moran
▴ 30
0
votes
0
replies
1.2k
views
Data grouping with DataTrack or AlignmentTrack classes
gviz
gviz-package
7.8 years ago
jma1991
▴ 70
0
votes
0
replies
1.5k
views
Gviz: control height of items within BiomartGeneRegionTrack (StackedTrack)
Gviz
gviz-package
7.9 years ago
Kort, Eric
▴ 220
2
votes
4
replies
3.3k
views
Error using Gviz and BiomartGeneRegionTrack, version problem?
Gviz-package
biomart
plottracks
ucsctrack
stickleback
updated 7.9 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.9 years ago by
br
• 0
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Comment: How to sort negative log2FC or FC in RNAseq for GSEA?
by
QN
▴ 10
Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…
Comment: EdgeR Biological CVs
by
ATpoint
★ 4.6k
"Joseph" is a spam bot...
Comment: Problems with oarfish + tximport + swish
by
Im
• 0
Office ta kemon
Answer: How to sort negative log2FC or FC in RNAseq for GSEA?
by
ATpoint
★ 4.6k
GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…
Comment: EdgeR Biological CVs
by
James
• 0
Thank you Gordon and Joseph. I presume question (1) would be answered by using a prior G0 of 0? For question (2), I was expecting a biolog…
Votes
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
Comment: EdgeR Biological CVs
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
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