Bioconductor Hclust

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4.8k

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dendrogram hclust textanalysis R RStudio

4.7 years ago • updated 4.6 years ago Abby ▴ 10

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2.2k

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deseq2 pca hclust

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by Arindam ▴ 80

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2.5k

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hclust hierarchical clustering clustering weight

updated 8.4 years ago by Aaron Lun ★ 29k • written 8.4 years ago by danielle.newby • 0

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3.6k

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pheatmap hclust R dendrogram

8.6 years ago vd4mmind • 0

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2.1k

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WGCNA hclust

8.7 years ago bag59 • 0

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2.1k

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heatmap.2 hclust reorderfun

updated 8.8 years ago by James W. MacDonald 68k • written 8.8 years ago by b.nota ▴ 370

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2.1k

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clustering hclust maSigPro

updated 9.8 years ago by efejiroe • 0 • written 10.4 years ago by dimitri.leonid.lindenwald ▴ 50

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2.8k

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hclust heatmap

10.8 years ago rmgreer • 0

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4.8k

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wgcna dendrogram network hclust

updated 11.2 years ago by Keith Hughitt ▴ 180 • written 11.2 years ago by Jon Bråte ▴ 270

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4.3k

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wgcna hclust plotdendroandcolors dendrogram

updated 11.2 years ago by James W. MacDonald 68k • written 11.2 years ago by Keith Hughitt ▴ 180

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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0

For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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