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hclust
•
reset
1
vote
7
replies
3.9k
views
Error with hclust
dendrogram
hclust
textanalysis
R
RStudio
3.8 years ago
Abby
▴ 10
1
vote
4
replies
1.8k
views
Difference in PCA variance calculation in DESeq2
deseq2
pca
hclust
updated 5.3 years ago by
Michael Love
43k • written 5.3 years ago by
Arindam
▴ 80
0
votes
1
reply
2.3k
views
Observation/case weighting in cluster analysis in R
hclust
hierarchical clustering
clustering
weight
updated 7.5 years ago by
Aaron Lun
★ 28k • written 7.5 years ago by
danielle.newby
• 0
0
votes
1
reply
3.2k
views
How to extract the distrances of the column dendrogram from pheatmap and just plot them with the distance scale?
pheatmap
hclust
R
dendrogram
7.7 years ago
vd4mmind
• 0
0
votes
3
replies
1.8k
views
WGCNA crashes R on OSX
WGCNA
hclust
7.8 years ago
bag59
• 0
0
votes
1
reply
1.9k
views
heatmap.2 reorder branches
heatmap.2
hclust
reorderfun
updated 8.0 years ago by
James W. MacDonald
67k • written 8.0 years ago by
b.nota
▴ 370
0
votes
1
reply
1.9k
views
Microarray time-course clustering, using "hclust" in masigPro
clustering
hclust
maSigPro
updated 9.0 years ago by
efejiroe
• 0 • written 9.5 years ago by
dimitri.leonid.lindenwald
▴ 50
1
vote
2
replies
2.6k
views
Supervised clustering by sample
hclust
heatmap
10.0 years ago
rmgreer
• 0
1
vote
2
replies
4.4k
views
Rearrange dendrogram to match merged modules in WGCNA?
wgcna
dendrogram
network
hclust
updated 10.3 years ago by
Keith Hughitt
▴ 180 • written 10.3 years ago by
Jon Bråte
▴ 260
0
votes
1
reply
4.0k
views
Plotting an hclust sub-tree in WGCNA?
wgcna
hclust
plotdendroandcolors
dendrogram
updated 10.4 years ago by
James W. MacDonald
67k • written 10.4 years ago by
Keith Hughitt
▴ 180
10 results • Page
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Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes
by
James W. MacDonald
67k
This support site is meant to provide support for Bioconductor packages, but `Meffil` is not part of Bioconductor. You could presumably con…
Comment: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.1k
> It looks like the ssgseaParam function might not be passing the > correct parameters to GSVA::gsva() Apparently because of the extra com…
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
by
franknappi14
• 0
I tried it and it's working properly.
Answer: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis
by
ATpoint
★ 4.6k
The vignette covers batch effects as per the authors best practice, please read it and consider following it.
Comment: DESeq2 analysis with transcript counts
by
kahunroleh
• 0
Thanks for sharing the solution. I also face this problem. [nulls][1] [1]: https://nulls-brawl-apk.fr/
Votes
Answer: Reducing and aggregating GRanges with gaps using plyranges
Answer: Find exact GRanges match keeping metadata columns
Answer: Find exact GRanges match keeping metadata columns
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
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