Bioconductor Hclust

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4.8k

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dendrogram hclust textanalysis R RStudio

4.8 years ago • updated 4.7 years ago Abby ▴ 10

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2.2k

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deseq2 pca hclust

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by Arindam ▴ 80

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2.6k

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hclust hierarchical clustering clustering weight

updated 8.5 years ago by Aaron Lun ★ 29k • written 8.5 years ago by danielle.newby • 0

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3.7k

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pheatmap hclust R dendrogram

8.7 years ago vd4mmind • 0

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2.1k

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WGCNA hclust

8.8 years ago bag59 • 0

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2.1k

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heatmap.2 hclust reorderfun

updated 8.9 years ago by James W. MacDonald 68k • written 8.9 years ago by b.nota ▴ 370

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2.2k

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clustering hclust maSigPro

updated 9.9 years ago by efejiroe • 0 • written 10.4 years ago by dimitri.leonid.lindenwald ▴ 50

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2.9k

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hclust heatmap

10.9 years ago rmgreer • 0

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4.8k

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wgcna dendrogram network hclust

updated 11.3 years ago by Keith Hughitt ▴ 180 • written 11.3 years ago by Jon Bråte ▴ 270

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4.4k

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wgcna hclust plotdendroandcolors dendrogram

updated 11.3 years ago by James W. MacDonald 68k • written 11.3 years ago by Keith Hughitt ▴ 180

10 results • Page 1 of 1

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Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k

Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…

Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k

Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…

Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k

Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…

Comment: Error in creating BSGenome package by Nguyen • 0

I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…

Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k

There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…

Votes

A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi

Answer: Clarification on counting in Rsubread (featureCounts)

Comment: Clarification on counting in Rsubread (featureCounts)

C: ControlGenes/ housekeeping genes Deseq2

Answer: Clarification on counting in Rsubread (featureCounts)

Awards • All

Popular Question to mohammedtoufiq91 ▴ 10

Popular Question to Lluís Revilla Sancho ▴ 760

Commentator to James W. MacDonald 68k

Great Question to fl ▴ 20