Showing : hgu95av2 • reset
0
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5
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2.8k
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ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 9.6 years ago by ▴ 110 • written 13.5 years ago by ▴ 760
0
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5
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2.9k
views
failing to filter ExpressionSet object using nsFilter
hgu95av2 hgu95av2
updated 11.3 years ago by 25k • written 11.3 years ago by ★ 13k
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0
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1.6k
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GEOquery/virtualArray package error
Preprocessing hgu95av2 virtualArray Preprocessing hgu95av2 virtualArray
11.5 years ago Guest User ★ 13k
0
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0
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views
[phenoTest package]: gsea.kegg error with absVals parameter
Pathways GO hgu133a hgu95av2 phenoTest Pathways GO hgu133a hgu95av2 phenoTest
11.6 years ago Kostas Kerkentzes ▴ 10
0
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1
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1.8k
views
Non-specific filtering of Affymetrix Microarray data
GO hgu95av2 GO hgu95av2
updated 11.7 years ago by ★ 13k • written 11.7 years ago by ★ 13k
2
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3
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1.6k
views
Creating Annotation package for GPL10427
Annotation hgu95av2 Annotation hgu95av2
updated 12.1 years ago by 68k • written 12.1 years ago by ★ 13k
0
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2
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4.0k
views
getGmt error
GO hgu95a hgu95av2 GO hgu95a hgu95av2
updated 12.1 years ago by 25k • written 12.1 years ago by ★ 13k
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library(\"geneplotter\") fails on load
GO hgu95av2 geneplotter GO hgu95av2 geneplotter
12.5 years ago Guest User ★ 13k
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6
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1.7k
views
serious problem with GOstats package
GO hgu95av2 GOstats GO hgu95av2 GOstats
updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ▴ 430
0
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1
reply
2.1k
views
nsfilter error from expressionset obtained after using aroma for processing
Annotation Preprocessing hgu95av2 limma Annotation Preprocessing hgu95av2 limma
updated 12.6 years ago by ★ 13k • written 12.6 years ago by ▴ 810
0
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1
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2.2k
views
enrichment of GO terms based on input gene list
GO hgu95av2 GO hgu95av2
updated 12.6 years ago by ▴ 570 • written 12.6 years ago by ★ 13k
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2
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2.0k
views
GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 12.7 years ago by 25k • written 12.7 years ago by ▴ 80
0
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1
reply
4.3k
views
getAnnMap: package hgu95av2 not available
hgu95av2 hgu95av2
updated 12.8 years ago by 25k • written 12.8 years ago by ★ 13k
0
votes
1
reply
1.2k
views
Annotation databases--unable to get annotations
Annotation GO hgu95av2 probe limma Annotation GO hgu95av2 probe limma
updated 13.1 years ago by 68k • written 13.1 years ago by ★ 13k
0
votes
0
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1.1k
views
gene2pathway retrain() error: species \'hsa\' unknown
Organism hgu95av2 gene2pathway Organism hgu95av2 gene2pathway
13.3 years ago Guest User ★ 13k
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0
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1.3k
views
Mapping genes to their gene sets for GSEA
Microarray Genetics GO hgu95av2 hgug4112a Microarray Genetics GO hgu95av2 hgug4112a
13.4 years ago Yoo, Seungyeul ▴ 110
0
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1
reply
4.0k
views
problems generating a gene2GOlist in topGO
Genetics Annotation GO hgu95av2 convert biomaRt topGO Genetics Annotation GO hgu95av2
updated 13.6 years ago by ▴ 400 • written 13.6 years ago by ▴ 510
0
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1
reply
1.6k
views
creating a UniprotIdentifier within GSEABase
Annotation Cancer hgu95av2 convert GSEABase Annotation Cancer hgu95av2 convert GSEABase
updated 14.2 years ago by 25k • written 14.2 years ago by ▴ 910
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0
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1.1k
views
Help with interpreting GEO derived data values
GO hgu95av2 GO hgu95av2
14.3 years ago Ochsner, Scott A ▴ 60
0
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1
reply
1.2k
views
Use of createSimpleBimap
hgu95av2 AnnotationDbi hgu95av2 AnnotationDbi
updated 14.6 years ago by ★ 4.2k • written 14.6 years ago by ★ 1.1k
0
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13
replies
3.0k
views
Hypergeometric test with Disease Ontology
GO hgu95av2 GO hgu95av2
updated 14.8 years ago by ▴ 300 • written 14.8 years ago by ▴ 60
0
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0
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1.1k
views
Problem in affypdnn package
hgu95av2 affypdnn hgu95av2 affypdnn
15.3 years ago Hasan, Ahmed Ryadh - hasar001 ▴ 20
0
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1
reply
1.6k
views
GSEABase and Broad Inst Sets
Annotation hgu133plus2 hgu95av2 GSEABase Annotation hgu133plus2 hgu95av2 GSEABase
updated 15.3 years ago by 25k • written 15.3 years ago by ▴ 930
0
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0
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1.3k
views
SPIA package problem
Microarray GO Cancer Organism hgu95av2 mgug4122a SPIA Microarray GO Cancer Organism
15.4 years ago January Weiner ▴ 370
0
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1
reply
1.3k
views
filtering in GSEABase package
GO hgu95av2 mouse4302 PROcess Category GO hgu95av2 mouse4302 PROcess Category
updated 15.6 years ago by ▴ 610 • written 15.6 years ago by ▴ 190
0
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1
reply
1.8k
views
KEGGSOAP, hgu95av2.db: limited functionality
Pathways hgu95av2 probe KEGGSOAP Pathways hgu95av2 probe KEGGSOAP
updated 15.7 years ago by ★ 7.2k • written 15.7 years ago by ▴ 70
0
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1
reply
1.9k
views
CNV analysis with cghMCR/CNTools
GO CGH hgu133a hgu95av2 GO CGH hgu133a hgu95av2
updated 15.8 years ago by ★ 2.9k • written 15.8 years ago by ★ 1.1k
0
votes
1
reply
1.3k
views
extracting all GO terms from GOHyperGResult object?
Annotation GO hgu95av2 GOstats Annotation GO hgu95av2 GOstats
updated 15.8 years ago by ▴ 610 • written 15.8 years ago by ★ 2.0k
0
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0
replies
1.7k
views
mget() error with NA values
Microarray Annotation hgu133plus2 hgu95av2 AnnotationDbi Microarray Annotation hgu133plus2
16.5 years ago James W. MacDonald 68k
0
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0
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1.1k
views
Bioconductor package to map probe set ids from one chip to another chip
Annotation GO Cancer hgu133a hgu95av2 probe Biostrings Annotation GO Cancer hgu133a
16.5 years ago Hervé Pagès 16k
0
votes
2
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5.6k
views
How to go from affymetrix to Ensembl transcript IDs
hgu95av2 affy biomaRt hgu95av2 affy biomaRt
updated 16.6 years ago by ★ 13k • written 16.6 years ago by ▴ 300
0
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0
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1.3k
views
browseGenome width question (rtracklayer)
Epigenetics GO hgu95av2 GLAD rtracklayer Epigenetics GO hgu95av2 GLAD rtracklayer
16.7 years ago Michael Lawrence ▴ 620
0
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1
reply
1.5k
views
GOstats: HyperGTest for KEGG
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
updated 16.8 years ago by ★ 7.2k • written 16.8 years ago by ▴ 180
0
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0
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1.5k
views
GOstats: hyperGTest for KEGG with org.Sc.sgd.db
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
16.8 years ago Paul Evans ▴ 180
0
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0
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1.6k
views
sd==0 for some probesets when using gcrma
Microarray Proteomics Epigenetics Normalization GO Cancer hgu95av2 affy graph gcrma GO
16.9 years ago Dick Beyer ★ 1.4k
0
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7
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2.0k
views
Rkeys function from AnnotationDbi returns all Rkeys for a subset
hgu95av2 hgu95av2
updated 16.9 years ago by 68k • written 16.9 years ago by ▴ 110
0
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0
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1.0k
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hyperGTest on KEGG and PFAM with org.XX.eg annotations
Microarray Annotation Escherichia coli hgu95av2 Category Microarray Annotation hgu95av2
16.9 years ago Marc Carlson ★ 7.2k
0
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0
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1.2k
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hyperGTest on KEGG and PFAM with org.XX.eg annotations
Microarray Annotation Escherichia coli hgu95av2 Microarray Annotation Escherichia coli
16.9 years ago James F. Reid ▴ 610
0
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0
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1.1k
views
Trouble Loading Rgraphviz in BioC 2.2 and 2.3
hgu95av2 Rgraphviz hgu95av2 Rgraphviz
17.0 years ago McGee, Monnie ▴ 300
0
votes
0
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1.1k
views
Mean Plots and Heat Maps for Chromosome Bands
Pathways hgu95av2 Pathways hgu95av2
17.0 years ago McGee, Monnie ▴ 300
0
votes
1
reply
1.2k
views
browseGenome width question (rtracklayer)
GO hgu95av2 GO hgu95av2
updated 17.0 years ago by ▴ 620 • written 17.0 years ago by ★ 1.1k
0
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8
replies
2.3k
views
Annotation packages
Annotation GO hgu95av2 affy limma Annotation GO hgu95av2 affy limma
updated 17.0 years ago by 21k • written 17.0 years ago by ▴ 350
0
votes
2
replies
1.3k
views
hyperGTest
GO hgu133a hgu133plus2 hgu95av2 GO hgu133a hgu133plus2 hgu95av2
updated 17.0 years ago by ★ 5.5k • written 17.0 years ago by ★ 1.2k
0
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3
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1.3k
views
Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 17.1 years ago by ★ 7.2k • written 17.1 years ago by ▴ 300
0
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1
reply
1.0k
views
Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 17.1 years ago by ★ 7.2k • written 17.1 years ago by ▴ 300
0
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2
replies
1.6k
views
GeneR fail to compile
hgu95av2 GeneR hgu95av2 GeneR
updated 17.1 years ago by ★ 5.5k • written 17.1 years ago by ▴ 120
0
votes
1
reply
1.1k
views
How to load annotations for pkgENTREZID, pkgGENENAME dynamically?
Cancer hgu95av2 affy Cancer hgu95av2 affy
updated 17.1 years ago by ▴ 360 • written 17.1 years ago by 25k
0
votes
3
replies
2.9k
views
How to carry out Gene Set Enrichment Analysis(GSEA) on an ordered list of Entrezgene ids?
Proteomics hgu95av2 GSEABase Proteomics hgu95av2 GSEABase
17.3 years ago anna freni sterrantino ▴ 120
0
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0
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1.5k
views
How to carry out Gene Set Enrichment Analysis(GSEA) on an ordered list of Entrezgene ids?
Proteomics hgu95av2 GSEABase Proteomics hgu95av2 GSEABase
17.3 years ago Chanchal Kumar ▴ 130
0
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1
reply
1.7k
views
GSEABase error in parsing msigdb_v2.5.xml
GO Infrastructure hgu95av2 Biobase Ruuid AnnotationDbi GO Infrastructure hgu95av2 Biobase
updated 17.5 years ago by 25k • written 17.5 years ago by ▴ 130
89 results • Page 1 of 2
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Comment: Using DESeq2 for age prediction by ATpoint ★ 5.0k
You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Ch…
Comment: Using DESeq2 for age prediction by picasa1983 • 0
Thanks ! Do you have any idea how to do that ?
Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
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