Showing : hgu95av2 • reset
0
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13
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2.2k
views
Hypergeometric test with Disease Ontology
GO hgu95av2 GO hgu95av2
updated 13.3 years ago by ▴ 300 • written 13.3 years ago by ▴ 60
0
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8
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1.7k
views
Annotation packages
Annotation GO hgu95av2 affy limma Annotation GO hgu95av2 affy limma
updated 15.5 years ago by 21k • written 15.5 years ago by ▴ 350
0
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7
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1.4k
views
Rkeys function from AnnotationDbi returns all Rkeys for a subset
hgu95av2 hgu95av2
updated 15.4 years ago by 65k • written 15.4 years ago by ▴ 110
0
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7
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1.7k
views
problem with GOstats, developmental version?
GO Survival hgu95av2 annotate affy affydata graph Rgraphviz limma gcrma matchprobes GO
updated 16.7 years ago by ★ 7.4k • written 16.7 years ago by ★ 2.2k
0
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6
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1.4k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 18.9 years ago by ★ 7.4k • written 18.9 years ago by ★ 1.4k
0
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6
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1.4k
views
mas5 update.default problem
hgu95av2 cdf affy affyio hgu95av2 cdf affy affyio
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 190
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6
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1.3k
views
serious problem with GOstats package
GO hgu95av2 GOstats GO hgu95av2 GOstats
updated 11.0 years ago by ★ 8.2k • written 11.0 years ago by ▴ 430
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5
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2.5k
views
failing to filter ExpressionSet object using nsFilter
hgu95av2 hgu95av2
updated 9.8 years ago by 25k • written 9.8 years ago by ★ 13k
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5
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2.2k
views
ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 8.1 years ago by ▴ 110 • written 12.0 years ago by ▴ 760
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4
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2.4k
views
HGU95a and HGU95av2 with gcrma
hgu95a hgu95av2 cdf gcrma hgu95a hgu95av2 cdf gcrma
updated 19.4 years ago by ★ 13k • written 19.5 years ago by ▴ 80
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4
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1.1k
views
Recent changes to Bioconductor packages
Normalization hgu95a hgu95av2 annotate reposTools limma Normalization hgu95a hgu95av2
21.0 years ago • updated 20.9 years ago madman@jimmy.harvard.edu ▴ 850
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3
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1.0k
views
Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 300
0
votes
3
replies
855
views
Problems using GO 1.6.0 in Windows
GO hgu133a hgu95av2 GO hgu133a hgu95av2
updated 19.9 years ago by ★ 2.9k • written 19.9 years ago by ▴ 550
0
votes
3
replies
1.2k
views
Annotation of U95av2 array
Microarray Genetics Annotation GO Cancer hgu95av2 probe affy AnnBuilder PROcess Genetics
updated 17.0 years ago by ▴ 870 • written 17.0 years ago by 65k
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3
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824
views
GO with mu11ksuba(b)
GO hgu95av2 mu11ksuba cdf GO hgu95av2 mu11ksuba cdf
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 300
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3
replies
2.4k
views
How to carry out Gene Set Enrichment Analysis(GSEA) on an ordered list of Entrezgene ids?
Proteomics hgu95av2 GSEABase Proteomics hgu95av2 GSEABase
15.8 years ago anna freni sterrantino ▴ 120
2
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3
replies
1.2k
views
Creating Annotation package for GPL10427
Annotation hgu95av2 Annotation hgu95av2
updated 10.6 years ago by 65k • written 10.6 years ago by ★ 13k
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2
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1.1k
views
problem with annaffy aafFunction function
GO hgu95av2 rat2302 Biobase annotate reposTools affy annaffy GO hgu95av2 rat2302 affy
updated 18.5 years ago by 65k • written 18.5 years ago by ▴ 890
0
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2
replies
1.6k
views
GEOquery and GEO issues
hgu95a hgu95av2 GEOquery hgu95a hgu95av2 GEOquery
18.3 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
0
votes
2
replies
1.2k
views
GeneR fail to compile
hgu95av2 GeneR hgu95av2 GeneR
updated 15.6 years ago by ★ 5.5k • written 15.6 years ago by ▴ 120
0
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2
replies
1.5k
views
problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
17.7 years ago Jenny Drnevich ★ 2.2k
0
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2
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989
views
GOstats and library ath1121501
ath1121501 hgu95av2 GOstats ath1121501 hgu95av2 GOstats
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ▴ 70
0
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2
replies
4.9k
views
How to go from affymetrix to Ensembl transcript IDs
hgu95av2 affy biomaRt hgu95av2 affy biomaRt
updated 15.1 years ago by ★ 13k • written 15.1 years ago by ▴ 300
0
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2
replies
1.2k
views
AnnBuilder questions
Annotation GO Yeast hgu95av2 probe geneplotter AnnBuilder Annotation GO Yeast hgu95av2
updated 16.7 years ago by ★ 7.2k • written 16.7 years ago by ▴ 30
0
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2
replies
953
views
hyperGTest
GO hgu133a hgu133plus2 hgu95av2 GO hgu133a hgu133plus2 hgu95av2
updated 15.6 years ago by ★ 5.5k • written 15.6 years ago by ★ 1.2k
0
votes
2
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3.2k
views
getGmt error
GO hgu95a hgu95av2 GO hgu95a hgu95av2
updated 10.7 years ago by 25k • written 10.7 years ago by ★ 13k
0
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2
replies
1.6k
views
GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 11.3 years ago by 25k • written 11.3 years ago by ▴ 80
0
votes
1
reply
1.7k
views
Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE GO Kidney hgu95av2 hu6800 rae230a cdf Biobase Ruuid DynDoc annotate edd multtest
updated 19.5 years ago by ★ 5.5k • written 19.5 years ago by ▴ 100
0
votes
1
reply
1.2k
views
hyperGTest Error in sqliteExecStatement...
GO hgu95av2 GOstats GO hgu95av2 GOstats
updated 16.0 years ago by ★ 5.5k • written 16.0 years ago by ▴ 10
0
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1
reply
1.0k
views
Querying PubMed Database
hgu95av2 rae230a annotate affy affydata hgu95av2 rae230a annotate affy affydata
updated 20.6 years ago by 6.7k • written 20.6 years ago by ▴ 60
0
votes
1
reply
701
views
ReadAffy problem sampleNames + hgu95av2
hgu95av2 Biobase affy hgu95av2 Biobase affy
20.0 years ago Adaikalavan Ramasamy ★ 1.8k
0
votes
1
reply
620
views
hgu95av2
hgu95av2 hgu95av2
updated 19.3 years ago by ★ 13k • written 19.3 years ago by ★ 1.3k
0
votes
1
reply
1.0k
views
Error with library hgu95av2
hgu95av2 hgu95av2
updated 19.2 years ago by ★ 7.4k • written 19.2 years ago by ▴ 40
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votes
1
reply
1.1k
views
simLL method in GOstats to measure distances between yeast genes
Yeast hgu95av2 ygs98 Yeast hgu95av2 ygs98
updated 18.9 years ago by ★ 5.5k • written 18.9 years ago by ▴ 100
0
votes
1
reply
653
views
Category package problems with Vignette documentation
Microarray hgu95av2 Category Microarray hgu95av2 Category
updated 18.9 years ago by ★ 5.5k • written 18.9 years ago by ▴ 20
0
votes
1
reply
892
views
rbind in annaffy problem
GO hgu95av2 rat2302 cdf annotate affy graph annaffy RBGL GOstats biomaRt GO hgu95av2
updated 18.4 years ago by 65k • written 18.4 years ago by ▴ 890
0
votes
1
reply
1.3k
views
Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
16.6 years ago Hervé Pagès 16k
0
votes
1
reply
948
views
ExpressionSet class and problems with phenotype and metadata matrices
Annotation Clustering hgu95av2 Annotation Clustering hgu95av2
updated 16.2 years ago by 65k • written 16.2 years ago by ▴ 60
0
votes
1
reply
1.4k
views
GSEABase error in parsing msigdb_v2.5.xml
GO Infrastructure hgu95av2 Biobase Ruuid AnnotationDbi GO Infrastructure hgu95av2 Biobase
updated 16.0 years ago by 25k • written 16.0 years ago by ▴ 130
0
votes
1
reply
857
views
How to load annotations for pkgENTREZID, pkgGENENAME dynamically?
Cancer hgu95av2 affy Cancer hgu95av2 affy
updated 15.6 years ago by ▴ 360 • written 15.6 years ago by 25k
0
votes
1
reply
830
views
Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 300
0
votes
1
reply
923
views
browseGenome width question (rtracklayer)
GO hgu95av2 GO hgu95av2
updated 15.5 years ago by ▴ 620 • written 15.5 years ago by ★ 1.1k
0
votes
1
reply
1.2k
views
GOstats: HyperGTest for KEGG
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 180
0
votes
1
reply
1.0k
views
extracting all GO terms from GOHyperGResult object?
Annotation GO hgu95av2 GOstats Annotation GO hgu95av2 GOstats
updated 14.3 years ago by ▴ 610 • written 14.3 years ago by ★ 2.0k
0
votes
1
reply
1.5k
views
CNV analysis with cghMCR/CNTools
GO CGH hgu133a hgu95av2 GO CGH hgu133a hgu95av2
updated 14.3 years ago by ★ 2.9k • written 14.3 years ago by ★ 1.1k
0
votes
1
reply
1.5k
views
KEGGSOAP, hgu95av2.db: limited functionality
Pathways hgu95av2 probe KEGGSOAP Pathways hgu95av2 probe KEGGSOAP
updated 14.2 years ago by ★ 7.2k • written 14.2 years ago by ▴ 70
0
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1
reply
1.1k
views
filtering in GSEABase package
GO hgu95av2 mouse4302 PROcess Category GO hgu95av2 mouse4302 PROcess Category
updated 14.1 years ago by ▴ 610 • written 14.1 years ago by ▴ 190
0
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1
reply
1.3k
views
GSEABase and Broad Inst Sets
Annotation hgu133plus2 hgu95av2 GSEABase Annotation hgu133plus2 hgu95av2 GSEABase
updated 13.8 years ago by 25k • written 13.8 years ago by ▴ 930
0
votes
1
reply
907
views
Use of createSimpleBimap
hgu95av2 AnnotationDbi hgu95av2 AnnotationDbi
updated 13.2 years ago by ★ 4.2k • written 13.2 years ago by ★ 1.1k
0
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1
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1.3k
views
creating a UniprotIdentifier within GSEABase
Annotation Cancer hgu95av2 convert GSEABase Annotation Cancer hgu95av2 convert GSEABase
updated 12.7 years ago by 25k • written 12.8 years ago by ▴ 910
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Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Comment: Store output of matchPWM() by James W. MacDonald 65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Comment: DEseq2 coefficient by JKim • 0
Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…
Votes
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
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