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Showing :
ideogram
•
reset
0
votes
3
replies
1.9k
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz
Saccharomyces_cerevisiae
Gviz
ideogram
updated 15 months ago by
Maryna
• 0 • written 2.1 years ago by
Michael
• 0
0
votes
0
replies
1.2k
views
ggbio error when following tutorial, ideogram not highlighted, genetrack not working
ggbio
ideogram
autoplot
6.9 years ago
gpwhiz
▴ 10
0
votes
3
replies
2.8k
views
R Gviz ideogram custom track
Gviz
ideogram
track
custom genome
R
8.1 years ago
wd
▴ 30
0
votes
2
replies
2.1k
views
Cytoband information for rice
rice
cytoband
circlize
ggbio
ideogram
8.3 years ago
Didi
▴ 10
1
vote
5
replies
3.2k
views
how to plot human genome chromosome Ideogram with each length by Gviz
Gviz
chromosome
ideogram
updated 8.7 years ago by
bernatgel
▴ 150 • written 8.7 years ago by
dulunar
▴ 10
0
votes
0
replies
1.5k
views
Rice genome ideogram construction
gviz
ideogram
plants_mart
8.9 years ago
sabrina.elias
• 0
4
votes
2
replies
2.8k
views
Create custom IdeogramTrack (Gviz)
gviz
ideogram
updated 9.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.7 years ago by
I-Hsuan Lin
▴ 10
0
votes
1
reply
1.7k
views
Gviz plot blank IdeogramTrack
gviz
ideogram
updated 10.1 years ago by
Robert Ivanek
▴ 750 • written 10.2 years ago by
Doris
• 0
0
votes
2
replies
2.0k
views
Trouble with Ideogram Plots
Gviz
ideogram
10.3 years ago
rowlandsd
• 0
0
votes
3
replies
1.7k
views
Gviz IdeogramTrack fails if species has no band information
gviz
ideogram
updated 10.6 years ago by
florian.hahne@novartis.com
★ 1.6k • written 10.6 years ago by
ari.loytynoja
• 0
0
votes
4
replies
2.3k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz
ideogram
snps
updated 10.8 years ago by
florian.hahne@novartis.com
★ 1.6k • written 10.8 years ago by
vnyirongo
• 0
0
votes
1
reply
2.3k
views
plotIdeogram for non-human or mouse genome
ideogram
ggbio
ideogram
ggbio
updated 11.2 years ago by
Tengfei Yin
▴ 490 • written 11.3 years ago by
Mark Dunning
★ 1.1k
0
votes
1
reply
1.3k
views
plotting both
ideogram
ideogram
updated 11.8 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 11.8 years ago by
Guest User
★ 13k
0
votes
1
reply
1.5k
views
tracks() and plotIdeogram() with non desired results in ggbio 1.10.9
TranscriptDb
ideogram
ggbio
TranscriptDb
ideogram
ggbio
updated 11.9 years ago by
Leonardo Collado Torres
★ 1.1k • written 11.9 years ago by
Tengfei Yin
▴ 490
0
votes
2
replies
1.8k
views
tracks() and plotIdeogram() with non desired results in ggbio 1.10.9
TranscriptDb
ideogram
TranscriptDb
ideogram
updated 11.9 years ago by
Tengfei Yin
▴ 490 • written 11.9 years ago by
Leonardo Collado Torres
★ 1.1k
1
vote
0
replies
1.6k
views
Fwd: GViz trouble retreiving X chromosome data with BiomartGeneRegionTrack
Annotation
ideogram
Gviz
Annotation
ideogram
Gviz
12.2 years ago
Martin Rijlaarsdam
▴ 190
0
votes
2
replies
2.4k
views
Gviz ideogram error
ideogram
Gviz
ideogram
Gviz
updated 12.2 years ago by
Steve Lianoglou
★ 13k • written 12.2 years ago by
Siddharth Sethi
▴ 10
0
votes
0
replies
1.6k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish
biomaRt
ideogram
genomes
zebrafish
biomaRt
ideogram
genomes
12.7 years ago
florian.hahne@novartis.com
★ 1.6k
0
votes
0
replies
1.0k
views
quick question : creating ideogram for a in-house genome
ideogram
ideogram
12.8 years ago
Abhishek Pratap
▴ 410
0
votes
1
reply
1.8k
views
Gviz: Error plotting C.elegans ideogram
ideogram
genomes
Gviz
ideogram
genomes
Gviz
13.4 years ago
Michael Dondrup
▴ 550
0
votes
0
replies
1.9k
views
Gviz plot dimensions
ideogram
Gviz
ideogram
Gviz
13.4 years ago
Murat Tasan
▴ 10
0
votes
1
reply
1.7k
views
GenomeGraphs question
SNP
biomaRt
ideogram
GenomeGraphs
SNP
biomaRt
ideogram
GenomeGraphs
updated 13.7 years ago by
Joern Toedling
▴ 50 • written 13.7 years ago by
Iain Gallagher
▴ 930
0
votes
0
replies
1.2k
views
plotting chromosome band names in GenomeGraphs
ideogram
quantsmooth
GenomeGraphs
ideogram
quantsmooth
GenomeGraphs
14.3 years ago
Pete Shepard
▴ 240
0
votes
2
replies
1.9k
views
Using GenomeGraphs effectively for generating publication quality pictures
affy
biomaRt
ideogram
GenomeGraphs
affy
biomaRt
ideogram
GenomeGraphs
updated 16.9 years ago by
steffen@stat.Berkeley.EDU
▴ 600 • written 17.0 years ago by
Daren Tan
▴ 190
0
votes
5
replies
2.1k
views
How to plot microRNA chromosome location
miRNA
ideogram
GenomeGraphs
rtracklayer
microRNA
miRNA
ideogram
GenomeGraphs
rtracklayer
updated 17.0 years ago by
Camper Chih-Wei Liu
▴ 40 • written 17.0 years ago by
Michael Lawrence
▴ 620
0
votes
3
replies
2.5k
views
How to plot microRNA chromosome location
miRNA
ideogram
GenomeGraphs
microRNA
miRNA
ideogram
GenomeGraphs
microRNA
updated 17.0 years ago by
Steve Lianoglou
★ 13k • written 17.0 years ago by
Camper Chih-Wei Liu
▴ 40
0
votes
1
reply
1.1k
views
Lodplot problem
Cancer
ideogram
Cancer
ideogram
updated 19.0 years ago by
Oosting, J. PATH
▴ 550 • written 19.0 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.0k
views
chromLocation
Microarray
probe
ideogram
Microarray
probe
ideogram
19.8 years ago
James W. MacDonald
68k
28 results • Page
1 of 1
Recent ...
Replies
Answer: Integration: Paired-end vs healthy single-end from a different source
by
James W. MacDonald
68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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