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Showing :
ideogram
•
reset
0
votes
3
replies
1.8k
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz
Saccharomyces_cerevisiae
Gviz
ideogram
updated 13 months ago by
Maryna
• 0 • written 23 months ago by
Michael
• 0
0
votes
0
replies
1.1k
views
ggbio error when following tutorial, ideogram not highlighted, genetrack not working
ggbio
ideogram
autoplot
6.7 years ago
gpwhiz
▴ 10
0
votes
3
replies
2.7k
views
R Gviz ideogram custom track
Gviz
ideogram
track
custom genome
R
7.9 years ago
wd
▴ 30
0
votes
2
replies
2.1k
views
Cytoband information for rice
rice
cytoband
circlize
ggbio
ideogram
8.2 years ago • updated 8.1 years ago
Didi
▴ 10
1
vote
5
replies
3.2k
views
how to plot human genome chromosome Ideogram with each length by Gviz
Gviz
chromosome
ideogram
updated 8.5 years ago by
bernatgel
▴ 150 • written 8.5 years ago by
dulunar
▴ 10
0
votes
0
replies
1.5k
views
Rice genome ideogram construction
gviz
ideogram
plants_mart
8.7 years ago
sabrina.elias
• 0
4
votes
2
replies
2.7k
views
Create custom IdeogramTrack (Gviz)
gviz
ideogram
updated 9.5 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.5 years ago by
I-Hsuan Lin
▴ 10
0
votes
1
reply
1.7k
views
Gviz plot blank IdeogramTrack
gviz
ideogram
updated 9.9 years ago by
Robert Ivanek
▴ 750 • written 10.0 years ago by
Doris
• 0
0
votes
2
replies
1.9k
views
Trouble with Ideogram Plots
Gviz
ideogram
10.1 years ago
rowlandsd
• 0
0
votes
3
replies
1.6k
views
Gviz IdeogramTrack fails if species has no band information
gviz
ideogram
updated 10.4 years ago by
florian.hahne@novartis.com
★ 1.6k • written 10.4 years ago by
ari.loytynoja
• 0
0
votes
4
replies
2.3k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz
ideogram
snps
updated 10.6 years ago by
florian.hahne@novartis.com
★ 1.6k • written 10.6 years ago by
vnyirongo
• 0
0
votes
1
reply
2.3k
views
plotIdeogram for non-human or mouse genome
ideogram
ggbio
ideogram
ggbio
updated 11.0 years ago by
Tengfei Yin
▴ 490 • written 11.1 years ago by
Mark Dunning
★ 1.1k
0
votes
1
reply
1.2k
views
plotting both
ideogram
ideogram
updated 11.6 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 11.6 years ago by
Guest User
★ 13k
0
votes
1
reply
1.5k
views
tracks() and plotIdeogram() with non desired results in ggbio 1.10.9
TranscriptDb
ideogram
ggbio
TranscriptDb
ideogram
ggbio
updated 11.7 years ago by
Leonardo Collado Torres
★ 1.1k • written 11.8 years ago by
Tengfei Yin
▴ 490
0
votes
2
replies
1.8k
views
tracks() and plotIdeogram() with non desired results in ggbio 1.10.9
TranscriptDb
ideogram
TranscriptDb
ideogram
updated 11.8 years ago by
Tengfei Yin
▴ 490 • written 11.8 years ago by
Leonardo Collado Torres
★ 1.1k
1
vote
0
replies
1.6k
views
Fwd: GViz trouble retreiving X chromosome data with BiomartGeneRegionTrack
Annotation
ideogram
Gviz
Annotation
ideogram
Gviz
12.0 years ago
Martin Rijlaarsdam
▴ 190
0
votes
2
replies
2.4k
views
Gviz ideogram error
ideogram
Gviz
ideogram
Gviz
updated 12.1 years ago by
Steve Lianoglou
★ 13k • written 12.1 years ago by
Siddharth Sethi
▴ 10
0
votes
0
replies
1.5k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish
biomaRt
ideogram
genomes
zebrafish
biomaRt
ideogram
genomes
12.6 years ago
florian.hahne@novartis.com
★ 1.6k
0
votes
0
replies
992
views
quick question : creating ideogram for a in-house genome
ideogram
ideogram
12.7 years ago
Abhishek Pratap
▴ 410
0
votes
1
reply
1.8k
views
Gviz: Error plotting C.elegans ideogram
ideogram
genomes
Gviz
ideogram
genomes
Gviz
13.2 years ago
Michael Dondrup
▴ 550
0
votes
0
replies
1.9k
views
Gviz plot dimensions
ideogram
Gviz
ideogram
Gviz
13.2 years ago
Murat Tasan
▴ 10
0
votes
1
reply
1.7k
views
GenomeGraphs question
SNP
biomaRt
ideogram
GenomeGraphs
SNP
biomaRt
ideogram
GenomeGraphs
updated 13.6 years ago by
Joern Toedling
▴ 50 • written 13.6 years ago by
Iain Gallagher
▴ 930
0
votes
0
replies
1.2k
views
plotting chromosome band names in GenomeGraphs
ideogram
quantsmooth
GenomeGraphs
ideogram
quantsmooth
GenomeGraphs
14.1 years ago
Pete Shepard
▴ 240
0
votes
2
replies
1.8k
views
Using GenomeGraphs effectively for generating publication quality pictures
affy
biomaRt
ideogram
GenomeGraphs
affy
biomaRt
ideogram
GenomeGraphs
updated 16.8 years ago by
steffen@stat.Berkeley.EDU
▴ 600 • written 16.8 years ago by
Daren Tan
▴ 190
0
votes
5
replies
2.1k
views
How to plot microRNA chromosome location
miRNA
ideogram
GenomeGraphs
rtracklayer
microRNA
miRNA
ideogram
GenomeGraphs
rtracklayer
updated 16.8 years ago by
Camper Chih-Wei Liu
▴ 40 • written 16.9 years ago by
Michael Lawrence
▴ 620
0
votes
3
replies
2.4k
views
How to plot microRNA chromosome location
miRNA
ideogram
GenomeGraphs
microRNA
miRNA
ideogram
GenomeGraphs
microRNA
updated 16.9 years ago by
Steve Lianoglou
★ 13k • written 16.9 years ago by
Camper Chih-Wei Liu
▴ 40
0
votes
1
reply
1.0k
views
Lodplot problem
Cancer
ideogram
Cancer
ideogram
updated 18.9 years ago by
Oosting, J. PATH
▴ 550 • written 18.9 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.0k
views
chromLocation
Microarray
probe
ideogram
Microarray
probe
ideogram
19.7 years ago
James W. MacDonald
68k
28 results • Page
1 of 1
Recent ...
Replies
Comment: WGCNA analysis on RNAseq and proteoimcs data
by
sum31278
• 0
Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks
Comment: European Bioconductor Conference 2023 planning
by
inadequate.peacock.iiag
• 0
I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…
Comment: ROAST compare results with complex design
by
Gordon Smyth
52k
It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.
Answer: ROAST compare results with complex design
by
James W. MacDonald
68k
You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
James W. MacDonald
68k
Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…
Votes
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
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