Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
ideogram
•
reset
0
votes
3
replies
1.9k
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz
Saccharomyces_cerevisiae
Gviz
ideogram
updated 16 months ago by
Maryna
• 0 • written 2.2 years ago by
Michael
• 0
0
votes
0
replies
1.2k
views
ggbio error when following tutorial, ideogram not highlighted, genetrack not working
ggbio
ideogram
autoplot
6.9 years ago
gpwhiz
▴ 10
0
votes
3
replies
2.8k
views
R Gviz ideogram custom track
Gviz
ideogram
track
custom genome
R
8.1 years ago
wd
▴ 30
0
votes
2
replies
2.1k
views
Cytoband information for rice
rice
cytoband
circlize
ggbio
ideogram
8.4 years ago
Didi
▴ 10
1
vote
5
replies
3.3k
views
how to plot human genome chromosome Ideogram with each length by Gviz
Gviz
chromosome
ideogram
updated 8.7 years ago by
bernatgel
▴ 150 • written 8.8 years ago by
dulunar
▴ 10
0
votes
0
replies
1.6k
views
Rice genome ideogram construction
gviz
ideogram
plants_mart
8.9 years ago
sabrina.elias
• 0
4
votes
2
replies
2.8k
views
Create custom IdeogramTrack (Gviz)
gviz
ideogram
updated 9.8 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.8 years ago by
I-Hsuan Lin
▴ 10
0
votes
1
reply
1.7k
views
Gviz plot blank IdeogramTrack
gviz
ideogram
updated 10.2 years ago by
Robert Ivanek
▴ 750 • written 10.2 years ago by
Doris
• 0
0
votes
2
replies
2.0k
views
Trouble with Ideogram Plots
Gviz
ideogram
10.4 years ago
rowlandsd
• 0
0
votes
3
replies
1.7k
views
Gviz IdeogramTrack fails if species has no band information
gviz
ideogram
updated 10.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 10.7 years ago by
ari.loytynoja
• 0
0
votes
4
replies
2.3k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz
ideogram
snps
updated 10.8 years ago by
florian.hahne@novartis.com
★ 1.6k • written 10.8 years ago by
vnyirongo
• 0
0
votes
1
reply
2.3k
views
plotIdeogram for non-human or mouse genome
ideogram
ggbio
ideogram
ggbio
updated 11.3 years ago by
Tengfei Yin
▴ 490 • written 11.3 years ago by
Mark Dunning
★ 1.1k
0
votes
1
reply
1.3k
views
plotting both
ideogram
ideogram
updated 11.8 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 11.8 years ago by
Guest User
★ 13k
0
votes
1
reply
1.5k
views
tracks() and plotIdeogram() with non desired results in ggbio 1.10.9
TranscriptDb
ideogram
ggbio
TranscriptDb
ideogram
ggbio
updated 12.0 years ago by
Leonardo Collado Torres
★ 1.1k • written 12.0 years ago by
Tengfei Yin
▴ 490
0
votes
2
replies
1.9k
views
tracks() and plotIdeogram() with non desired results in ggbio 1.10.9
TranscriptDb
ideogram
TranscriptDb
ideogram
updated 12.0 years ago by
Tengfei Yin
▴ 490 • written 12.0 years ago by
Leonardo Collado Torres
★ 1.1k
1
vote
0
replies
1.6k
views
Fwd: GViz trouble retreiving X chromosome data with BiomartGeneRegionTrack
Annotation
ideogram
Gviz
Annotation
ideogram
Gviz
12.3 years ago
Martin Rijlaarsdam
▴ 190
0
votes
2
replies
2.4k
views
Gviz ideogram error
ideogram
Gviz
ideogram
Gviz
updated 12.3 years ago by
Steve Lianoglou
★ 13k • written 12.3 years ago by
Siddharth Sethi
▴ 10
0
votes
0
replies
1.6k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish
biomaRt
ideogram
genomes
zebrafish
biomaRt
ideogram
genomes
12.8 years ago
florian.hahne@novartis.com
★ 1.6k
0
votes
0
replies
1.0k
views
quick question : creating ideogram for a in-house genome
ideogram
ideogram
12.9 years ago
Abhishek Pratap
▴ 410
0
votes
1
reply
1.9k
views
Gviz: Error plotting C.elegans ideogram
ideogram
genomes
Gviz
ideogram
genomes
Gviz
13.4 years ago
Michael Dondrup
▴ 550
0
votes
0
replies
2.0k
views
Gviz plot dimensions
ideogram
Gviz
ideogram
Gviz
13.4 years ago
Murat Tasan
▴ 10
0
votes
1
reply
1.7k
views
GenomeGraphs question
SNP
biomaRt
ideogram
GenomeGraphs
SNP
biomaRt
ideogram
GenomeGraphs
updated 13.8 years ago by
Joern Toedling
▴ 50 • written 13.8 years ago by
Iain Gallagher
▴ 930
0
votes
0
replies
1.3k
views
plotting chromosome band names in GenomeGraphs
ideogram
quantsmooth
GenomeGraphs
ideogram
quantsmooth
GenomeGraphs
14.4 years ago
Pete Shepard
▴ 240
0
votes
2
replies
1.9k
views
Using GenomeGraphs effectively for generating publication quality pictures
affy
biomaRt
ideogram
GenomeGraphs
affy
biomaRt
ideogram
GenomeGraphs
updated 17.0 years ago by
steffen@stat.Berkeley.EDU
▴ 600 • written 17.0 years ago by
Daren Tan
▴ 190
0
votes
5
replies
2.2k
views
How to plot microRNA chromosome location
miRNA
ideogram
GenomeGraphs
rtracklayer
microRNA
miRNA
ideogram
GenomeGraphs
rtracklayer
updated 17.1 years ago by
Camper Chih-Wei Liu
▴ 40 • written 17.1 years ago by
Michael Lawrence
▴ 620
0
votes
3
replies
2.5k
views
How to plot microRNA chromosome location
miRNA
ideogram
GenomeGraphs
microRNA
miRNA
ideogram
GenomeGraphs
microRNA
updated 17.1 years ago by
Steve Lianoglou
★ 13k • written 17.1 years ago by
Camper Chih-Wei Liu
▴ 40
0
votes
1
reply
1.1k
views
Lodplot problem
Cancer
ideogram
Cancer
ideogram
updated 19.1 years ago by
Oosting, J. PATH
▴ 550 • written 19.1 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.1k
views
chromLocation
Microarray
probe
ideogram
Microarray
probe
ideogram
19.9 years ago
James W. MacDonald
68k
28 results • Page
1 of 1
Recent ...
Replies
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR
by
JKim
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release
by
Jeroen
▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Answer: p.adjust BH Question
by
Gordon Smyth
53k
Duplicate of https://support.bioconductor.org/p/41077/
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Awards
• All
Popular Question
to
shepherl
4.2k
Popular Question
to
story.benjamin
▴ 20
Popular Question
to
Gordon Smyth
53k
Supporter
to
fabio.marroni
• 0
Popular Question
to
Guido Hooiveld
★ 4.1k
Locations
• All
United States,
56 minutes ago
Barcelona, Spain,
57 minutes ago
Germany,
59 minutes ago
United States,
1 hour ago
United States,
2 hours ago
Traffic: 712 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6