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Showing :
ideogram
•
reset
0
votes
3
replies
1.4k
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz
Saccharomyces_cerevisiae
Gviz
ideogram
updated 4 months ago by
Maryna
• 0 • written 14 months ago by
Michael
• 0
0
votes
0
replies
1.0k
views
ggbio error when following tutorial, ideogram not highlighted, genetrack not working
ggbio
ideogram
autoplot
5.9 years ago
gpwhiz
▴ 10
0
votes
3
replies
2.4k
views
R Gviz ideogram custom track
Gviz
ideogram
track
custom genome
R
7.1 years ago
wd
▴ 30
0
votes
2
replies
1.9k
views
Cytoband information for rice
rice
cytoband
circlize
ggbio
ideogram
7.4 years ago
Didi
▴ 10
1
vote
5
replies
2.8k
views
how to plot human genome chromosome Ideogram with each length by Gviz
Gviz
chromosome
ideogram
updated 7.7 years ago by
bernatgel
▴ 150 • written 7.8 years ago by
dulunar
▴ 10
0
votes
0
replies
1.3k
views
Rice genome ideogram construction
gviz
ideogram
plants_mart
7.9 years ago
sabrina.elias
• 0
4
votes
2
replies
2.5k
views
Create custom IdeogramTrack (Gviz)
gviz
ideogram
updated 8.8 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.8 years ago by
I-Hsuan Lin
▴ 10
0
votes
1
reply
1.5k
views
Gviz plot blank IdeogramTrack
gviz
ideogram
updated 9.2 years ago by
Robert Ivanek
▴ 750 • written 9.2 years ago by
Doris
• 0
0
votes
2
replies
1.6k
views
Trouble with Ideogram Plots
Gviz
ideogram
9.4 years ago
rowlandsd
• 0
0
votes
3
replies
1.5k
views
Gviz IdeogramTrack fails if species has no band information
gviz
ideogram
updated 9.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.7 years ago by
ari.loytynoja
• 0
0
votes
4
replies
2.0k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz
ideogram
snps
updated 9.8 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.8 years ago by
vnyirongo
• 0
0
votes
1
reply
2.0k
views
plotIdeogram for non-human or mouse genome
ideogram
ggbio
ideogram
ggbio
updated 10.3 years ago by
Tengfei Yin
▴ 490 • written 10.3 years ago by
Mark Dunning
★ 1.1k
0
votes
1
reply
1.1k
views
plotting both
ideogram
ideogram
updated 10.8 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 10.8 years ago by
Guest User
★ 13k
0
votes
1
reply
1.3k
views
tracks() and plotIdeogram() with non desired results in ggbio 1.10.9
TranscriptDb
ideogram
ggbio
TranscriptDb
ideogram
ggbio
updated 11.0 years ago by
Leonardo Collado Torres
★ 1.1k • written 11.0 years ago by
Tengfei Yin
▴ 490
0
votes
2
replies
1.6k
views
tracks() and plotIdeogram() with non desired results in ggbio 1.10.9
TranscriptDb
ideogram
TranscriptDb
ideogram
updated 11.0 years ago by
Tengfei Yin
▴ 490 • written 11.0 years ago by
Leonardo Collado Torres
★ 1.1k
1
vote
0
replies
1.5k
views
Fwd: GViz trouble retreiving X chromosome data with BiomartGeneRegionTrack
Annotation
ideogram
Gviz
Annotation
ideogram
Gviz
11.3 years ago
Martin Rijlaarsdam
▴ 190
0
votes
2
replies
2.1k
views
Gviz ideogram error
ideogram
Gviz
ideogram
Gviz
updated 11.3 years ago by
Steve Lianoglou
★ 13k • written 11.3 years ago by
Siddharth Sethi
▴ 10
0
votes
0
replies
1.4k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish
biomaRt
ideogram
genomes
zebrafish
biomaRt
ideogram
genomes
11.8 years ago
florian.hahne@novartis.com
★ 1.6k
0
votes
0
replies
894
views
quick question : creating ideogram for a in-house genome
ideogram
ideogram
11.9 years ago
Abhishek Pratap
▴ 410
0
votes
1
reply
1.6k
views
Gviz: Error plotting C.elegans ideogram
ideogram
genomes
Gviz
ideogram
genomes
Gviz
12.4 years ago
Michael Dondrup
▴ 550
0
votes
0
replies
1.8k
views
Gviz plot dimensions
ideogram
Gviz
ideogram
Gviz
12.4 years ago
Murat Tasan
▴ 10
0
votes
1
reply
1.5k
views
GenomeGraphs question
SNP
biomaRt
ideogram
GenomeGraphs
SNP
biomaRt
ideogram
GenomeGraphs
updated 12.8 years ago by
Joern Toedling
▴ 50 • written 12.8 years ago by
Iain Gallagher
▴ 930
0
votes
0
replies
1.1k
views
plotting chromosome band names in GenomeGraphs
ideogram
quantsmooth
GenomeGraphs
ideogram
quantsmooth
GenomeGraphs
13.4 years ago
Pete Shepard
▴ 240
0
votes
2
replies
1.7k
views
Using GenomeGraphs effectively for generating publication quality pictures
affy
biomaRt
ideogram
GenomeGraphs
affy
biomaRt
ideogram
GenomeGraphs
updated 16.0 years ago by
steffen@stat.Berkeley.EDU
▴ 600 • written 16.0 years ago by
Daren Tan
▴ 190
0
votes
5
replies
1.9k
views
How to plot microRNA chromosome location
miRNA
ideogram
GenomeGraphs
rtracklayer
microRNA
miRNA
ideogram
GenomeGraphs
rtracklayer
updated 16.1 years ago by
Camper Chih-Wei Liu
▴ 40 • written 16.1 years ago by
Michael Lawrence
▴ 620
0
votes
3
replies
2.2k
views
How to plot microRNA chromosome location
miRNA
ideogram
GenomeGraphs
microRNA
miRNA
ideogram
GenomeGraphs
microRNA
updated 16.1 years ago by
Steve Lianoglou
★ 13k • written 16.1 years ago by
Camper Chih-Wei Liu
▴ 40
0
votes
1
reply
905
views
Lodplot problem
Cancer
ideogram
Cancer
ideogram
updated 18.1 years ago by
Oosting, J. PATH
▴ 550 • written 18.1 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
891
views
chromLocation
Microarray
probe
ideogram
Microarray
probe
ideogram
18.9 years ago
James W. MacDonald
67k
28 results • Page
1 of 1
Recent ...
Replies
Answer: Epic v2 Annotation CpG_maf source?
by
James W. MacDonald
67k
Those all come from dbSNP by way of UCSC. [See here][1], particularly lines 114 and onward. Here is no MAF for a CpG. The MAF is for the…
Comment: Deseq2 res Function
by
James W. MacDonald
67k
In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…
Answer: Struggle with the replicates of epic array data
by
James W. MacDonald
67k
You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Robert Castelo
★ 3.4k
So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…
Answer: Deseq2 res Function
by
Michael Love
43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Votes
Appropriate use of the function treat of the limma package
Comment: Is it recommended to analyze different tissues together when using edgeR
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
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