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Showing :
ideogram
•
reset
1
vote
5
replies
2.5k
views
how to plot human genome chromosome Ideogram with each length by Gviz
Gviz
chromosome
ideogram
updated 7.2 years ago by
bernatgel
▴ 150 • written 7.2 years ago by
dulunar
▴ 10
0
votes
2
replies
1.6k
views
Cytoband information for rice
rice
cytoband
circlize
ggbio
ideogram
6.9 years ago • updated 6.8 years ago
Didi
▴ 10
0
votes
2
replies
1.4k
views
Trouble with Ideogram Plots
Gviz
ideogram
8.9 years ago
rowlandsd
• 0
0
votes
5
replies
1.7k
views
How to plot microRNA chromosome location
miRNA
ideogram
GenomeGraphs
rtracklayer
microRNA
miRNA
ideogram
GenomeGraphs
rtracklayer
updated 15.5 years ago by
Camper Chih-Wei Liu
▴ 40 • written 15.6 years ago by
Michael Lawrence
▴ 620
0
votes
3
replies
1.3k
views
Gviz IdeogramTrack fails if species has no band information
gviz
ideogram
updated 9.2 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.2 years ago by
ari.loytynoja
• 0
0
votes
1
reply
1.3k
views
GenomeGraphs question
SNP
biomaRt
ideogram
GenomeGraphs
SNP
biomaRt
ideogram
GenomeGraphs
updated 12.3 years ago by
Joern Toedling
▴ 50 • written 12.3 years ago by
Iain Gallagher
▴ 930
0
votes
1
reply
809
views
Lodplot problem
Cancer
ideogram
Cancer
ideogram
updated 17.6 years ago by
Oosting, J. PATH
▴ 550 • written 17.6 years ago by
Daniel Brewer
★ 1.9k
0
votes
3
replies
2.0k
views
How to plot microRNA chromosome location
miRNA
ideogram
GenomeGraphs
microRNA
miRNA
ideogram
GenomeGraphs
microRNA
updated 15.6 years ago by
Steve Lianoglou
★ 13k • written 15.6 years ago by
Camper Chih-Wei Liu
▴ 40
0
votes
2
replies
1.5k
views
Using GenomeGraphs effectively for generating publication quality pictures
affy
biomaRt
ideogram
GenomeGraphs
affy
biomaRt
ideogram
GenomeGraphs
updated 15.5 years ago by
steffen@stat.Berkeley.EDU
▴ 600 • written 15.5 years ago by
Daren Tan
▴ 190
0
votes
1
reply
1.5k
views
Gviz: Error plotting C.elegans ideogram
ideogram
genomes
Gviz
ideogram
genomes
Gviz
11.9 years ago
Michael Dondrup
▴ 550
0
votes
2
replies
1.9k
views
Gviz ideogram error
ideogram
Gviz
ideogram
Gviz
updated 10.8 years ago by
Steve Lianoglou
★ 13k • written 10.8 years ago by
Siddharth Sethi
▴ 10
0
votes
2
replies
1.5k
views
tracks() and plotIdeogram() with non desired results in ggbio 1.10.9
TranscriptDb
ideogram
TranscriptDb
ideogram
updated 10.5 years ago by
Tengfei Yin
▴ 490 • written 10.5 years ago by
Leonardo Collado Torres
★ 1.0k
0
votes
1
reply
1.2k
views
tracks() and plotIdeogram() with non desired results in ggbio 1.10.9
TranscriptDb
ideogram
ggbio
TranscriptDb
ideogram
ggbio
updated 10.5 years ago by
Leonardo Collado Torres
★ 1.0k • written 10.5 years ago by
Tengfei Yin
▴ 490
0
votes
1
reply
980
views
plotting both
ideogram
ideogram
updated 10.3 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 10.3 years ago by
Guest User
★ 13k
0
votes
1
reply
1.9k
views
plotIdeogram for non-human or mouse genome
ideogram
ggbio
ideogram
ggbio
updated 9.7 years ago by
Tengfei Yin
▴ 490 • written 9.8 years ago by
Mark Dunning
★ 1.1k
0
votes
4
replies
1.8k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz
ideogram
snps
updated 9.3 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.3 years ago by
vnyirongo
• 0
0
votes
1
reply
1.4k
views
Gviz plot blank IdeogramTrack
gviz
ideogram
updated 8.6 years ago by
Robert Ivanek
▴ 730 • written 8.7 years ago by
Doris
• 0
4
votes
2
replies
2.3k
views
Create custom IdeogramTrack (Gviz)
gviz
ideogram
updated 8.2 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.2 years ago by
I-Hsuan Lin
▴ 10
0
votes
0
replies
784
views
quick question : creating ideogram for a in-house genome
ideogram
ideogram
11.4 years ago
Abhishek Pratap
▴ 410
0
votes
0
replies
1.6k
views
Gviz plot dimensions
ideogram
Gviz
ideogram
Gviz
11.9 years ago
Murat Tasan
▴ 10
0
votes
0
replies
1.3k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish
biomaRt
ideogram
genomes
zebrafish
biomaRt
ideogram
genomes
11.3 years ago
florian.hahne@novartis.com
★ 1.6k
1
vote
0
replies
1.3k
views
Fwd: GViz trouble retreiving X chromosome data with BiomartGeneRegionTrack
Annotation
ideogram
Gviz
Annotation
ideogram
Gviz
10.7 years ago
Martin Rijlaarsdam
▴ 190
0
votes
0
replies
875
views
ggbio error when following tutorial, ideogram not highlighted, genetrack not working
ggbio
ideogram
autoplot
5.4 years ago
gpwhiz
▴ 10
0
votes
3
replies
789
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz
Saccharomyces_cerevisiae
Gviz
ideogram
updated 8 months ago by
Robert Ivanek
▴ 730 • written 8 months ago by
Michael
• 0
0
votes
0
replies
1.2k
views
Rice genome ideogram construction
gviz
ideogram
plants_mart
7.4 years ago
sabrina.elias
• 0
0
votes
0
replies
1.0k
views
plotting chromosome band names in GenomeGraphs
ideogram
quantsmooth
GenomeGraphs
ideogram
quantsmooth
GenomeGraphs
12.8 years ago
Pete Shepard
▴ 240
0
votes
0
replies
775
views
chromLocation
Microarray
probe
ideogram
Microarray
probe
ideogram
18.4 years ago
James W. MacDonald
66k
0
votes
3
replies
2.1k
views
R Gviz ideogram custom track
Gviz
ideogram
track
custom genome
R
6.6 years ago
wd
▴ 30
28 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt
by
blackwidowzzz
• 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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