Showing : ideogram • reset
4
votes
2
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2.3k
views
Create custom IdeogramTrack (Gviz)
gviz ideogram
updated 8.2 years ago by ★ 1.6k • written 8.2 years ago by ▴ 10
1
vote
0
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1.3k
views
Fwd: GViz trouble retreiving X chromosome data with BiomartGeneRegionTrack
Annotation ideogram Gviz Annotation ideogram Gviz
10.7 years ago Martin Rijlaarsdam ▴ 190
1
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5
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2.5k
views
how to plot human genome chromosome Ideogram with each length by Gviz
Gviz chromosome ideogram
updated 7.2 years ago by ▴ 150 • written 7.2 years ago by ▴ 10
0
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3
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2.0k
views
How to plot microRNA chromosome location
miRNA ideogram GenomeGraphs microRNA miRNA ideogram GenomeGraphs microRNA
updated 15.5 years ago by ★ 13k • written 15.5 years ago by ▴ 40
0
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5
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1.7k
views
How to plot microRNA chromosome location
miRNA ideogram GenomeGraphs rtracklayer microRNA miRNA ideogram GenomeGraphs rtracklayer
updated 15.5 years ago by ▴ 40 • written 15.5 years ago by ▴ 620
0
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2
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1.5k
views
Using GenomeGraphs effectively for generating publication quality pictures
affy biomaRt ideogram GenomeGraphs affy biomaRt ideogram GenomeGraphs
updated 15.4 years ago by ▴ 600 • written 15.5 years ago by ▴ 190
0
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0
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992
views
plotting chromosome band names in GenomeGraphs
ideogram quantsmooth GenomeGraphs ideogram quantsmooth GenomeGraphs
12.8 years ago Pete Shepard ▴ 240
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0
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1.6k
views
Gviz plot dimensions
ideogram Gviz ideogram Gviz
11.9 years ago Murat Tasan ▴ 10
0
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1
reply
1.5k
views
Gviz: Error plotting C.elegans ideogram
ideogram genomes Gviz ideogram genomes Gviz
11.9 years ago Michael Dondrup ▴ 550
0
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0
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775
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quick question : creating ideogram for a in-house genome
ideogram ideogram
11.3 years ago Abhishek Pratap ▴ 410
0
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0
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1.3k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish biomaRt ideogram genomes zebrafish biomaRt ideogram genomes
11.2 years ago florian.hahne@novartis.com ★ 1.6k
0
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2
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1.9k
views
Gviz ideogram error
ideogram Gviz ideogram Gviz
updated 10.7 years ago by ★ 13k • written 10.7 years ago by ▴ 10
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2
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1.4k
views
tracks() and plotIdeogram() with non desired results in ggbio 1.10.9
TranscriptDb ideogram TranscriptDb ideogram
updated 10.4 years ago by ▴ 490 • written 10.4 years ago by ★ 1.0k
0
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1
reply
1.2k
views
tracks() and plotIdeogram() with non desired results in ggbio 1.10.9
TranscriptDb ideogram ggbio TranscriptDb ideogram ggbio
updated 10.4 years ago by ★ 1.0k • written 10.4 years ago by ▴ 490
0
votes
1
reply
973
views
plotting both
ideogram ideogram
updated 10.3 years ago by ▴ 50 • written 10.3 years ago by ★ 13k
0
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1
reply
1.9k
views
plotIdeogram for non-human or mouse genome
ideogram ggbio ideogram ggbio
updated 9.7 years ago by ▴ 490 • written 9.8 years ago by ★ 1.1k
0
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4
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1.8k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz ideogram snps
updated 9.3 years ago by ★ 1.6k • written 9.3 years ago by • 0
0
votes
3
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1.3k
views
Gviz IdeogramTrack fails if species has no band information
gviz ideogram
updated 9.1 years ago by ★ 1.6k • written 9.1 years ago by • 0
0
votes
2
replies
1.4k
views
Trouble with Ideogram Plots
Gviz ideogram
8.8 years ago rowlandsd • 0
0
votes
1
reply
1.4k
views
Gviz plot blank IdeogramTrack
gviz ideogram
updated 8.6 years ago by ▴ 730 • written 8.7 years ago by • 0
0
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0
replies
1.1k
views
Rice genome ideogram construction
gviz ideogram plants_mart
7.4 years ago sabrina.elias • 0
0
votes
2
replies
1.6k
views
Cytoband information for rice
rice cytoband circlize ggbio ideogram
6.8 years ago Didi ▴ 10
0
votes
3
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2.1k
views
R Gviz ideogram custom track
Gviz ideogram track custom genome R
6.6 years ago wd ▴ 30
0
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0
replies
868
views
ggbio error when following tutorial, ideogram not highlighted, genetrack not working
ggbio ideogram autoplot
5.4 years ago gpwhiz ▴ 10
0
votes
1
reply
1.3k
views
GenomeGraphs question
SNP biomaRt ideogram GenomeGraphs SNP biomaRt ideogram GenomeGraphs
updated 12.2 years ago by ▴ 50 • written 12.2 years ago by ▴ 930
0
votes
3
replies
755
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz Saccharomyces_cerevisiae Gviz ideogram
updated 7 months ago by ▴ 730 • written 7 months ago by • 0
0
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0
replies
771
views
chromLocation
Microarray probe ideogram Microarray probe ideogram
18.3 years ago James W. MacDonald 65k
0
votes
1
reply
804
views
Lodplot problem
Cancer ideogram Cancer ideogram
updated 17.5 years ago by ▴ 550 • written 17.5 years ago by ★ 1.9k
28 results • Page 1 of 1
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
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Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
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