Bioconductor InSilicoMerging

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insilicomerging batcheffect limma differential gene expression bioconductor

updated 8.8 years ago by Aaron Lun ★ 28k • written 8.8 years ago by svlachavas ▴ 830

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inSilicoMerging inSilicoMerging

updated 10.7 years ago by Dan Tenenbaum ★ 8.2k • written 10.7 years ago by Li Liu ▴ 100

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combine expresiondataset insilicomerging

8.8 years ago alakatos ▴ 130

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frma bioconductor batcheffect Primeview insilicomerging

updated 9.0 years ago by Matthew McCall ▴ 830 • written 9.0 years ago by svlachavas ▴ 830

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inSilicoMerging doubleannotation affymetrix microarrays limma inSilicoDB

8.7 years ago svlachavas ▴ 830

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MDSplot geneexpression insilicomerging

updated 8.1 years ago by James W. MacDonald 65k • written 8.1 years ago by Shamim Sarhadi ▴ 20

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Colon hgu133a2 hgu133plus2 limma inSilicoMerging Colon hgu133a2 hgu133plus2 limma

10.9 years ago Ed Siefker ▴ 230

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insilicomerging error insilicodb expressionset

7.3 years ago andreas.pittroff • 0

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inSilicoMerging inSilicoMerging

updated 10.0 years ago by Quentin De Clerck ▴ 10 • written 10.0 years ago by François Lefebvre ▴ 50

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inSilicoMerging

9.5 years ago Li Liu ▴ 100

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inSilicoMerging microarray affymetrix microarrays

updated 5.4 years ago by James W. MacDonald 65k • written 5.4 years ago by Adam_M • 0

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insilicomerging

8.9 years ago carol white ▴ 680

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affy insilicomerging

5.1 years ago pratikshasharma47 • 0

13 results • Page 1 of 1

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Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by fatinataly • 0

I tried also with oligo does not work, any other suggestion?

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…

Comment: Differences in differential analysis methods for RNA-Seq by james.zhang20 • 0

Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…

Answer: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k

There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …

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A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

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Popular Question to rohitsatyam102 ▴ 20