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insilicomerging
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table (pData(eset_NONE)[,"Study"]); table(pData(eset_NONE)[,"Disease"]);
affy
insilicomerging
6.8 years ago
pratikshasharma47
• 0
1
vote
3
replies
1.6k
views
Two microarrays merging (different experiments) - Error with esets (inSilicoMerging package)
inSilicoMerging
microarray
affymetrix microarrays
updated 7.2 years ago by
James W. MacDonald
68k • written 7.2 years ago by
Adam_M
• 0
0
votes
1
reply
1.8k
views
InSilicoMerging error when using merge
insilicomerging
error
insilicodb
expressionset
9.0 years ago
andreas.pittroff
• 0
0
votes
3
replies
2.1k
views
error in drawing MDS plot for eset
MDSplot
geneexpression
insilicomerging
updated 9.9 years ago by
James W. MacDonald
68k • written 9.9 years ago by
Shamim Sarhadi
▴ 20
4
votes
8
replies
2.5k
views
Annotation Problem regarding double platform merged microarray eset using the inSilicoMerging R package, after differential expression analysis
inSilicoMerging
doubleannotation
affymetrix microarrays
limma
inSilicoDB
10.5 years ago
svlachavas
▴ 840
1
vote
2
replies
2.8k
views
Combining ExpressionSet objects : error with function merge() in "inSilicoMerging"
combine
expresiondataset
insilicomerging
10.6 years ago
alakatos
▴ 130
6
votes
4
replies
4.7k
views
Merge different datasets and perform differential expression analysis in limma
insilicomerging
batcheffect
limma
differential gene expression
bioconductor
updated 10.6 years ago by
Aaron Lun
★ 29k • written 10.6 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.2k
views
problem with insilicoMerging
insilicomerging
10.7 years ago
carol white
▴ 680
1
vote
5
replies
2.7k
views
Appropriate merge of batches of the same array to create a final total ExpressionSet
frma
bioconductor
batcheffect
Primeview
insilicomerging
updated 10.8 years ago by
Matthew McCall
▴ 830 • written 10.8 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.4k
views
'DWD' method in 'inSilicoMerging' packages
inSilicoMerging
11.2 years ago
Li Liu
▴ 100
0
votes
1
reply
1.7k
views
inSilicoMerging:::mergeCOMBAT covariates
inSilicoMerging
inSilicoMerging
updated 11.8 years ago by
Quentin De Clerck
▴ 10 • written 11.8 years ago by
François Lefebvre
▴ 50
0
votes
6
replies
3.0k
views
DWD method for batch effect removal
inSilicoMerging
inSilicoMerging
updated 12.5 years ago by
Dan Tenenbaum
★ 8.2k • written 12.5 years ago by
Li Liu
▴ 100
0
votes
2
replies
2.4k
views
inSilicoMerging and Limma
Colon
hgu133a2
hgu133plus2
limma
inSilicoMerging
Colon
hgu133a2
hgu133plus2
limma
12.7 years ago
Ed Siefker
▴ 230
13 results • Page
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• 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
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shepherl
4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
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53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
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▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
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