Bioconductor IsoformswitchanalyzeR

Showing : isoformswitchanalyzeR • reset

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113

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 18 days ago by Michael Love 41k • written 18 days ago by 09191919 • 0

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156

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IsoformSwitchAnalyzeR

8 weeks ago Henry • 0

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284

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stringtie IsoformSwitchAnalyzeR pfamAnalyzeR gtf

updated 5 months ago by James W. MacDonald 65k • written 5 months ago by sumitra.20 • 0

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312

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IsoformSwitchAnalyzeR satuRn

7 months ago jbono ▴ 10

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1.5k

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salmon IsoformSwitchAnalyzeR tximport RNASeqData

updated 9 months ago by k.vitting.seerup ▴ 120 • written 9 months ago by elva.gypsophila ▴ 10

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646

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IsoformSwitchAnalyzeR

10 months ago venura • 0

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438

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IsoformSwitchAnalyzeR

11 months ago Callum • 0

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376

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Isoform IsoformSwitchAnalyzeR

12 months ago Craig • 0

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1.4k

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dplyr IsoformSwitchAnalyzeR

written 12 months ago by ramon.dslps • 0

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1.7k

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AlternativeSplicing RNASeq IsoformSwitchAnalyzeR gtf

written 21 months ago by bpshtiwan ▴ 10

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2.2k

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isoformswitchanalyzeR rna-seq splice-variants

written 5.1 years ago by saddamhusain77 • 0

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1.2k

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isoformswitchanalyzer isoform differential isoform usage

written 5.4 years ago by A ▴ 40

12 results • Page 1 of 1

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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k

Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Votes

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

Answer: Trim/Filter out-of-bounds GRanges

Comment: Help with running egsea()

Answer: How to save the DEXSeq results

Awards • All

Scholar to Michael Love 41k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k