Bioconductor Jaspar

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2.5k

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pwm pfm jaspar motifdb

updated 6.8 years ago by Bioconductor Community 0 • written 6.9 years ago by chrisclarkson100 ▴ 50

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1.1k

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pwm motifs jaspar meme motif analysis

6.9 years ago rbronste ▴ 60

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1.2k

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jaspar rsqlite

updated 7.7 years ago by James W. MacDonald 68k • written 7.7 years ago by m.d.shapiro • 0

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2.9k

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pwm tfbstools jaspar

updated 8.1 years ago by Ge Tan ▴ 20 • written 8.1 years ago by chrisclarkson100 ▴ 50

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2.0k

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transcription jaspar

updated 8.5 years ago by James W. MacDonald 68k • written 8.5 years ago by nia ▴ 30

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2.6k

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motifdb JASPAR transcription factor binding site

10.0 years ago Lisa Hopcroft ▴ 40

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1.9k

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tfbstools jaspar

updated 10.0 years ago by Ge Tan ▴ 20 • written 10.1 years ago by JasonLouisStein • 0

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2.2k

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rgadem motiv chipseq jaspar

updated 10.4 years ago by emercier • 0 • written 10.5 years ago by w.jarassier • 0

8 results • Page 1 of 1

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Comment: Using DESeq2 for age prediction by ATpoint ★ 5.0k

You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Ch…

Comment: Using DESeq2 for age prediction by picasa1983 • 0

Thanks ! Do you have any idea how to do that ?

Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k

The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…

Votes

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

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Oracle to shepherl 4.2k