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motifDb PFM vs JASPAR database PFM: conversion to PWM
pwm pfm jaspar motifdb
updated 7.0 years ago by 0 • written 7.2 years ago by ▴ 50
0
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1.2k
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Plotting motif enrichment vs background - Jaspar core vertebrates
pwm motifs jaspar meme motif analysis
7.1 years ago rbronste ▴ 60
0
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2
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1.3k
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trouble accessing JASPAR2018.sqlite
jaspar rsqlite
updated 7.9 years ago by 68k • written 7.9 years ago by • 0
2
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1
reply
3.1k
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Error: unable to find an inherited method for function searchSeq for signature matrix
pwm tfbstools jaspar
updated 8.3 years ago by ▴ 20 • written 8.3 years ago by ▴ 50
0
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1
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2.1k
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TF ANALYSIS USING JASPAR
transcription jaspar
updated 8.8 years ago by 68k • written 8.8 years ago by ▴ 20
2
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6
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2.7k
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Identifying TF binding sites (Motifdb + TxDb.Hsapiens.UCSC.hg19.knownGene)
motifdb JASPAR transcription factor binding site
10.2 years ago Lisa Hopcroft ▴ 40
0
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1
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2.0k
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TFBSTools access to JASPAR2014 via getMatrixSet()
tfbstools jaspar
updated 10.3 years ago by ▴ 20 • written 10.3 years ago by • 0
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3
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2.3k
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Problem with rGADEM & MotIV - one matrix consensus after GADEM() and one plot enrichment motif
rgadem motiv chipseq jaspar
updated 10.6 years ago by • 0 • written 10.7 years ago by • 0
8 results • Page 1 of 1
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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k
I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by ATpoint ★ 5.0k
Yes, still it's not reproducible, yet hard to debug. I cannot reproduce myself either.
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0
Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…
Answer: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0
Still happening in a clean install
Votes
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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