Bioconductor Jaspar

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2.6k

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pwm pfm jaspar motifdb

updated 6.9 years ago by Bioconductor Community 0 • written 7.1 years ago by chrisclarkson100 ▴ 50

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1.2k

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pwm motifs jaspar meme motif analysis

7.0 years ago rbronste ▴ 60

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1.3k

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jaspar rsqlite

updated 7.8 years ago by James W. MacDonald 68k • written 7.8 years ago by m.d.shapiro • 0

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3.0k

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pwm tfbstools jaspar

updated 8.2 years ago by Ge Tan ▴ 20 • written 8.2 years ago by chrisclarkson100 ▴ 50

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2.0k

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transcription jaspar

updated 8.7 years ago by James W. MacDonald 68k • written 8.7 years ago by nia ▴ 30

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motifdb JASPAR transcription factor binding site

10.1 years ago Lisa Hopcroft ▴ 40

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1.9k

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tfbstools jaspar

updated 10.2 years ago by Ge Tan ▴ 20 • written 10.2 years ago by JasonLouisStein • 0

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2.3k

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rgadem motiv chipseq jaspar

updated 10.5 years ago by emercier • 0 • written 10.6 years ago by w.jarassier • 0

8 results • Page 1 of 1

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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