Showing : keggsoap • reset
1
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5
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About the state of KEGG-related packages
KEGGSOAP KEGGgraph keggorthology clusterProfiler KEGGprofile PathNet KEGGSOAP KEGGgraph
updated 10.8 years ago by ★ 1.6k • written 10.8 years ago by ▴ 660
1
vote
16
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2.0k
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error installing KEGGSOAP
KEGGSOAP KEGGSOAP
updated 11.3 years ago by 25k • written 11.3 years ago by ▴ 420
0
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0
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1.0k
views
KEGGSOAP - Error in xmlName(node[[1]]) : no applicable method for "xmlName"
KEGGSOAP KEGGSOAP
19.3 years ago michael watson IAH-C ★ 3.4k
0
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0
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645
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mark.pathway.by.objects return NULL
KEGGSOAP KEGGSOAP
19.3 years ago Yi-Xiong Sean Zhou ▴ 50
0
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1
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1.2k
views
Bioconductor Install Problems
Rgraphviz KEGGSOAP Rgraphviz KEGGSOAP
updated 19.3 years ago by ★ 7.4k • written 19.3 years ago by ▴ 10
0
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0
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917
views
problem with get.genes.by.pathway
Biobase reposTools KEGGSOAP Biobase reposTools KEGGSOAP
18.6 years ago Kimpel, Mark W ▴ 890
0
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12
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2.1k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 18.1 years ago by ★ 7.4k • written 18.1 years ago by ▴ 30
0
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0
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681
views
Inconsistent results returned from KEGG
KEGGSOAP KEGGSOAP
18.1 years ago michael watson IAH-C ★ 3.4k
0
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2
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1.1k
views
help with KEGG or KEGGSOAP
KEGGSOAP KEGGSOAP
updated 17.5 years ago by ▴ 870 • written 17.5 years ago by ▴ 40
0
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7
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1.3k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 17.4 years ago by ▴ 870 • written 17.5 years ago by ★ 6.0k
0
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0
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918
views
KEGGSOAP questions: how to handle multiple annotations in R data frames, and why does a "for" loop only use one annotation.
Annotation KEGGSOAP Annotation KEGGSOAP
17.5 years ago ALAN SMITH ▴ 40
0
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0
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793
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KEGGSOAP Question: get.pathways.by.compounds
Pathways KEGGSOAP Pathways KEGGSOAP
17.5 years ago Nianhua Li ▴ 870
0
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3
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926
views
libraries or commands to help with parsing or handling web based database queries
PROcess KEGGSOAP PROcess KEGGSOAP
updated 17.2 years ago by ★ 1.7k • written 17.2 years ago by ▴ 40
0
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1
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1.0k
views
KEGGSOAP: color.pathway.by.objects
Pathways KEGGSOAP Pathways KEGGSOAP
updated 16.7 years ago by ★ 2.9k • written 16.7 years ago by ▴ 30
0
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3
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1.2k
views
Retrieving KEGG pathway diagrams via KEGGSOAP
KEGGSOAP KEGGSOAP
updated 15.1 years ago by ▴ 140 • written 15.1 years ago by ▴ 120
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0
replies
911
views
Visulising KEGG pathways using KEGGSOAP - example code
Pathways geneplotter KEGGSOAP biomaRt GEOquery Pathways geneplotter KEGGSOAP biomaRt
15.1 years ago michael watson IAH-C ★ 3.4k
0
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1
reply
786
views
KEGG pathway IDs ,issing
Annotation Cancer KEGGSOAP Annotation Cancer KEGGSOAP
updated 15.1 years ago by ★ 7.2k • written 15.1 years ago by ★ 1.9k
0
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3
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1.4k
views
building enzyme centric metabolic network
Network KEGGSOAP Network KEGGSOAP
updated 15.1 years ago by 25k • written 15.1 years ago by ▴ 270
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2
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1.4k
views
KEGGSOAP (installation?) problem
KEGGSOAP KEGGSOAP
updated 15.0 years ago by ★ 7.2k • written 15.0 years ago by ▴ 140
0
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4
replies
1.2k
views
KEGGSOAP problem
KEGGSOAP KEGGSOAP
updated 15.0 years ago by 6.7k • written 15.0 years ago by ▴ 350
0
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0
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776
views
KEGGSOAP install problem
Cancer KEGGSOAP Cancer KEGGSOAP
15.0 years ago Daniel Brewer ★ 1.9k
0
votes
3
replies
1.3k
views
KEGGSOAP: problem with get.pathways.by.genes()
Pathways convert KEGGSOAP Pathways convert KEGGSOAP
updated 15.0 years ago by ▴ 400 • written 15.0 years ago by ▴ 30
0
votes
0
replies
947
views
KEGGSOAP package: I can't retrieve KEGG pathway diagrams
hgu133a KEGGSOAP hgu133a KEGGSOAP
14.8 years ago Paolo Sonego ▴ 140
0
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0
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964
views
KEGGSOAP package
KEGGSOAP KEGGSOAP
14.8 years ago Glazko, Galina ▴ 350
0
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2
replies
999
views
KEGGSOAP returning blank pages
Cancer KEGGSOAP Cancer KEGGSOAP
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ★ 1.9k
0
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1
reply
1.5k
views
KEGGSOAP, hgu95av2.db: limited functionality
Pathways hgu95av2 probe KEGGSOAP Pathways hgu95av2 probe KEGGSOAP
updated 14.2 years ago by ★ 7.2k • written 14.2 years ago by ▴ 70
0
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2
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3.3k
views
GEOquery -> cannot open URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/ ....
KEGGSOAP GEOquery KEGGSOAP GEOquery
updated 13.3 years ago by 21k • written 13.3 years ago by ▴ 340
0
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0
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814
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SSOAP functions
KEGGSOAP KEGGSOAP
13.0 years ago Michael Gormley ▴ 60
0
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2
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1.0k
views
Problem installing KEGGSOAP
KEGGSOAP KEGGSOAP
updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ▴ 140
0
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1
reply
839
views
KEGGSOAP incomplete list.pathways
Pathways KEGGSOAP Pathways KEGGSOAP
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ★ 13k
0
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1
reply
1.1k
views
KEGGsoap: Space required after the Public Identifier
KEGGSOAP KEGGSOAP
updated 12.3 years ago by 25k • written 12.3 years ago by ▴ 70
0
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1
reply
797
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 12.3 years ago by ★ 7.2k • written 12.3 years ago by ▴ 110
0
votes
2
replies
1.4k
views
A bug in either KEGG or KEGGSOAP?
Pathways KEGGSOAP Pathways KEGGSOAP
updated 12.3 years ago by ★ 7.2k • written 12.3 years ago by ▴ 230
0
votes
0
replies
961
views
Problem using KEGGSOAP: multiple genes per identity
Pathways KEGGSOAP Pathways KEGGSOAP
12.3 years ago January Weiner ▴ 240
0
votes
0
replies
945
views
PostForm() with KEGG
GO Cancer KEGGSOAP GO Cancer KEGGSOAP
12.2 years ago Voke AO ▴ 760
0
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5
replies
1.2k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 12.2 years ago by ▴ 20 • written 12.2 years ago by ▴ 110
0
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1
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1.2k
views
FrozenRMA how to
Microarray Network hgu133plus2 Biobase PROcess KEGGSOAP beadarray EBImage edgeR frma
updated 12.2 years ago by ▴ 830 • written 12.2 years ago by ▴ 20
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2
replies
1.0k
views
KEGGSOAP: list.pathways(org) or alternative way
Pathways Organism KEGGSOAP Pathways Organism KEGGSOAP
updated 11.7 years ago by ★ 7.2k • written 11.7 years ago by ▴ 30
0
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1
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830
views
Problem in KEGGSOAP package
KEGGSOAP KEGGSOAP
updated 11.3 years ago by ★ 8.2k • written 11.3 years ago by ▴ 120
0
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0
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1.1k
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KEGGREST package is available in devel
KEGGSOAP KEGGREST KEGGSOAP KEGGREST
11.3 years ago Dan Tenenbaum ★ 8.2k
0
votes
2
replies
1.3k
views
pathway analysis package
RBGL KEGGSOAP RBGL KEGGSOAP
updated 19.4 years ago by 21k • written 19.4 years ago by ▴ 60
0
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1
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834
views
KEGGSOAP:: KEGGxmlns object not found
keggsoap keggrest
6.0 years ago doctor.dee005 • 0
0
votes
2
replies
861
views
Problems installing KEGGSOAP
KEGGSOAP KEGGSOAP
19.3 years ago michael watson IAH-C ★ 3.4k
43 results • Page 1 of 1
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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results by ATpoint ★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data by ATpoint ★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
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