Bioconductor MakeContrasts

Showing : makeContrasts • reset

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5.1k

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limma model.matrix makecontrasts

updated 5.9 years ago by Gordon Smyth 50k • written 5.9 years ago by enricoferrero ▴ 660

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4.2k

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limma microarray interaction model multiple factor design makeContrasts

updated 8.2 years ago by Aaron Lun ★ 28k • written 8.2 years ago by svlachavas ▴ 830

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1.4k

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designmatrices differentialexpression makeContrasts limma model.matrix

2.1 years ago mohammedtoufiq91 ▴ 10

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4.9k

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limma design matrix makecontrasts multiple comparisons

7.3 years ago • updated 7.2 years ago annabelle.congras ▴ 10

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2.2k

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contrast matrix toptable makecontrasts differential gene expression

6.6 years ago stinehedensted • 0

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1.2k

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limma model.matrix makecontrasts

7.2 years ago TFony ▴ 10

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1.9k

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diffrential expression limma makeContrasts

updated 5.8 years ago by Gordon Smyth 50k • written 5.8 years ago by S.Bamopoulos ▴ 10

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2.4k

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limma contrast missing data lmfit makecontrasts

updated 6.7 years ago by Gordon Smyth 50k • written 6.7 years ago by wewolski ▴ 10

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1.4k

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edger makecontrasts timecourse

updated 7.5 years ago by Ryan C. Thompson ★ 7.9k • written 7.5 years ago by aec ▴ 90

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1.3k

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limma toptable makecontrasts contrast matrix

updated 6.8 years ago by Ryan C. Thompson ★ 7.9k • written 6.8 years ago by hoe • 0

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876

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microarray dge matrix makecontrasts limma

updated 3.8 years ago by Gordon Smyth 50k • written 3.8 years ago by June. ▴ 10

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1.1k

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makeContrasts edgeR

updated 2.7 years ago by Steve Lianoglou ★ 13k • written 2.7 years ago by HS ▴ 10

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736

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deseq2 makecontrasts

updated 6.4 years ago by Michael Love 41k • written 6.4 years ago by samuel.quentin • 0

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1.4k

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edger makecontrasts

7.9 years ago xiaoaozqd • 0

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1.7k

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rnaseq edger makecontrasts

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by wangzhang1988 • 0

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932

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rnaseq edgeR makecontrasts interactions

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by David R ▴ 90

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Comment: Couldn't connect to server while using "pathways" by ATpoint ★ 4.1k

Please understand that we neither can see your screen, nor read minds. You at least need to provide the line of code and the name of the pa…

Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of unavailability.…

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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Scholar to ATpoint ★ 4.1k