Showing : makeTxDBFromGFF • reset
2
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1.8k
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Problem with MakeTxDbFromGFF
makeTxDbFromGff
written 2.8 years ago by • 0
3
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4
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4.0k
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Saving and retrieving TxDB object
makeTxDBFromGFF EISA
updated 5.3 years ago by 68k • written 5.3 years ago by • 0
0
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2.0k
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error with makeTxDbFromGFF
genomicfeatures gff custom genome makeTxDbFromGFF makeTxDbFromGRanges
6.7 years ago xvazquezc • 0
0
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1
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1.6k
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Error in .merge_transcript_parts(transcripts)
maketxdbfromgff
7.1 years ago csijcs • 0
0
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2
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2.9k
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makeTxDbFromGFF errors too many NAs and make.splicings
maketxdbfromgff limma
updated 7.2 years ago by 16k • written 7.2 years ago by ▴ 20
0
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1.9k
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makeTxDbFromGFF error "stop codons that cannot be mapped to an exon"
genomicfeatures txdb maketxdbfromgff
updated 7.4 years ago by ▴ 50 • written 7.4 years ago by • 0
0
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1.3k
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Error using the makeTxDbFromGFF
maketxdbfromgff
7.9 years ago bright602 • 0
0
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1
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4.7k
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create a txdb using makeTxDbFromGFF
bioconductor txdb maketxdbfromgff
8.0 years ago Nader.Aryamanesh • 0
0
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3
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4.5k
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makeTxDbFromGFF Error: subscript contains NAs
genomicfeatures granges maketxdbfromgff
updated 8.3 years ago by 16k • written 8.4 years ago by • 0
1
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2
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1.4k
views
Error while using GenomicFeatures package
genomicfeatures maketxdbfromgff
updated 8.8 years ago by 16k • written 8.8 years ago by ▴ 10
3
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2
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2.8k
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makeTxDbFromGFF drops genes which have multiple chromosome locations. (with iGenome GTF)
genomicfeatures gtf maketxdbfromgff iGenome
updated 9.1 years ago by 25k • written 9.1 years ago by ▴ 20
1
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2
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1.7k
views
mRNA start used instead of gene start in makeTxDbFromGFF
maketxdbfromgff genomicfeatures
updated 9.6 years ago by 16k • written 9.6 years ago by ▴ 80
4
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2
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1.8k
views
distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
genomicfeatures txdb maketxdbfromgff metadata
updated 9.6 years ago by ★ 6.8k • written 9.6 years ago by ▴ 80
0
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5
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2.3k
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makeTxDbFromGFF returns empty object
genomicfeatures txdb maketxdbfromgff
9.6 years ago TimothéeFlutre ▴ 80
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1.2k
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Annotation missing when using makeTxDbFromGFF
makeTxDbFromGFF
9.8 years ago Udi Landau ▴ 30
8
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7
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4.7k
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Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb
updated 9.9 years ago by 16k • written 9.9 years ago by ▴ 10
0
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7
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2.5k
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Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures maketxdbfromgff tx_type gtf
updated 10.0 years ago by 16k • written 10.0 years ago by • 0
0
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0
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1.5k
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Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures maketxdbfromgff tx_type gtf
10.0 years ago Karolin Wiedemann • 0
0
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4
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2.5k
views
MakeTxDbFromGFF creates empty object
maketxdbfromgff
updated 10.1 years ago by 16k • written 10.1 years ago by • 0
0
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7
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3.0k
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makeTxDbFromGFF yields an empty TxDb
annotation maketxdbfromgff genomicfeatures
10.1 years ago José Luis Lavín ▴ 10
0
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2
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2.7k
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makeTxDbpackage after makeTxDbfromGFF --> Error in spc[[2]] : subscript out of bounds
gtf TxDb maketxdbfromgff
updated 10.5 years ago by 16k • written 10.5 years ago by • 0
0
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2
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2.5k
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makeTxDbFromGFF not capturing/displaying 'gene' records from GFF3 file.
genomicfeatures makeTxDbFromGFF
updated 10.6 years ago by 16k • written 10.6 years ago by • 0
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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0
For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …
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You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
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In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
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Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
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BTW, I tested with no issue on MacOS ARM on our previous github issue.
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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