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Accessing local installation of biomart results in "Unexpected format to the list of available marts"
mart martconfigurator biomaRt xml
updated 3.4 years ago by ★ 6.5k • written 3.4 years ago by • 0
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784
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News: Ensembl 100 has been released
biomart ensembl e100 mart news News
4.0 years ago Thomas Maurel ▴ 800
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2
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2.0k
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Error in martCheck(mart, c("ensembl", "ENSEMBL_MART_ENSEMBL")) : No dataset selected, please select a dataset first.
biomart mart ensembl
updated 4.1 years ago by 65k • written 4.1 years ago by • 0
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707
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News: Ensembl 99 has been released and renaming of species
biomart ensembl e99 mart news News
4.3 years ago Thomas Maurel ▴ 800
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0
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881
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News: Ensembl 98 has been released and renaming of species
biomart ensembl e98 mart News
4.6 years ago Thomas Maurel ▴ 800
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4
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1.1k
views
retrieve vgnc gene name or vgnc gene symbol from Biomart after differential analysis
biomart mart getbm
updated 5.7 years ago by 65k • written 5.7 years ago by ▴ 20
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0
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1.1k
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News: Ensembl release 85 is out!
ensembl biomart release85 ensembl release mart News
7.8 years ago Thomas Maurel ▴ 800
4
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9
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2.9k
views
News: Ensembl release 84 is out!
ensembl mart release84 biomart ensembl release News
updated 8.0 years ago by ▴ 20 • written 8.1 years ago by ▴ 800
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
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Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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