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meta-analysis
•
reset
2
votes
4
replies
1.6k
views
R package for Meta-Analysis of CHIP-Seq data
chipseq
meta-analysis
ubuntu
7.0 years ago
rezapanahi222
• 0
2
votes
5
replies
2.6k
views
Question on how to proceed and analyze 9 microarray datasets of two different platforms to perform meta-analysis
microarray
meta-analysis
cross-platform normalization
statistical inference
updated 7.9 years ago by
alexvpickering
▴ 110 • written 8.3 years ago by
Konstantinos Yeles
▴ 80
3
votes
6
replies
2.1k
views
Comparison of DE lists from different datasets of same microarray platform
microarray
DE-comparison
meta-analysis
scatter-plot
limma
8.2 years ago
Konstantinos Yeles
▴ 80
3
votes
6
replies
1.3k
views
Possible approach of compare/interpret RNA-Seq results with microarray gene expression describing the same phenotype
microarray
rnaseq
DEgenes
meta-analysis
limma
updated 7.3 years ago by
Aaron Lun
★ 28k • written 7.3 years ago by
svlachavas
▴ 830
4
votes
4
replies
1.4k
views
Comparing DE probes from same-platform microarrays
limma
microarray
meta-analysis
updated 8.4 years ago by
Gordon Smyth
50k • written 8.4 years ago by
clevy
▴ 10
0
votes
1
reply
969
views
What does one-sided p-value in DESeq2 mean in biological terms?
one-sided
nbinomWaldTest
p-value
meta-analysis
DESeq2
updated 2.7 years ago by
Michael Love
42k • written 2.7 years ago by
nash12
• 0
2
votes
4
replies
2.8k
views
Meta-Analysis after running limma on a normalized dataset
meta-analysis
limma
toptable
updated 8.8 years ago by
Aaron Lun
★ 28k • written 8.8 years ago by
Vani
▴ 20
4
votes
1
reply
2.3k
views
Meta-analysis of gene expression data by 'MetaDE'
r
meta-analysis
MetaDE
updated 8.4 years ago by
Cherif Ben Hamda
▴ 150 • written 8.8 years ago by
Agaz Hussain Wani
▴ 260
6
votes
4
replies
3.0k
views
Meta-analysis of microarrays (and RNA-seq) data
meta-analysis
updated 7.1 years ago by
alexvpickering
▴ 110 • written 7.1 years ago by
giroudpaul
▴ 40
2
votes
1
reply
726
views
how do meta-analysis with Na p-value of DESeq2 ?
deseq2
meta-analysis
metaseq
updated 6.9 years ago by
Michael Love
42k • written 6.9 years ago by
ed_isfahani
• 0
0
votes
11
replies
3.8k
views
Remove NaN from a list or replace NaN with a value.
R
meta-analysis
updated 2.8 years ago by
Tanya
• 0 • written 5.5 years ago by
morteza.hadizade
▴ 10
1
vote
2
replies
853
views
Meta-analysis of RNAseq data
RNAseq
meta-analysis
microarray
public data sets
updated 5.3 years ago by
alexvpickering
▴ 110 • written 5.3 years ago by
Vladimir Krasikov
▴ 90
3
votes
1
reply
525
views
Meta-Analysis: Start with counts?
meta-analysis
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
kerr
• 0
0
votes
3
replies
1.8k
views
Algorithm for between and within microarray normalisation (for meta-analysis).
microarray
meta-analysis
gene expression
updated 5.4 years ago by
Bioconductor Community
0 • written 7.8 years ago by
StephK
▴ 70
0
votes
1
reply
1.1k
views
meta analysis of p value data by metaseq package
rnaseq
meta-analysis
p values
7.4 years ago
hassangiahi
• 0
0
votes
1
reply
938
views
Meta-analysis on rna-seq data without replicates
meta-analysis
rnaseq
metarnaseq
updated 7.6 years ago by
Michael Love
42k • written 7.6 years ago by
bioinformatics
▴ 10
0
votes
7
replies
1.5k
views
Problem using load_raw() function in crossmeta R package
cross
meta-analysis
crossmeta
3.3 years ago • updated 3.2 years ago
michael.s
• 0
0
votes
0
replies
1.8k
views
MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
MetaDE
meta-analysis
8.2 years ago
alexvpickering
▴ 110
0
votes
0
replies
809
views
tools or package for meta-analysis of chip-seq result
chipseq
meta-analysis
7.0 years ago
rezapanahi222
• 0
0
votes
0
replies
856
views
Meta-Analysis chip-seq data
chip-seq
meta-analysis
6.9 years ago
rezapanahi222
• 0
20 results • Page
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Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt
by
blackwidowzzz
• 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Votes
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
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