Showing : meta-analysis • reset
0
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1
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957
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What does one-sided p-value in DESeq2 mean in biological terms?
one-sided nbinomWaldTest p-value meta-analysis DESeq2
updated 2.7 years ago by 41k • written 2.7 years ago by • 0
0
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11
replies
3.8k
views
Remove NaN from a list or replace NaN with a value.
R meta-analysis
updated 2.7 years ago by • 0 • written 5.5 years ago by ▴ 10
0
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7
replies
1.5k
views
Problem using load_raw() function in crossmeta R package
cross meta-analysis crossmeta
3.2 years ago michael.s • 0
3
votes
1
reply
520
views
Meta-Analysis: Start with counts?
meta-analysis
updated 5.0 years ago by ★ 28k • written 5.0 years ago by • 0
1
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2
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841
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Meta-analysis of RNAseq data
RNAseq meta-analysis microarray public data sets
updated 5.2 years ago by ▴ 110 • written 5.2 years ago by ▴ 90
0
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3
replies
1.8k
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Algorithm for between and within microarray normalisation (for meta-analysis).
microarray meta-analysis gene expression
updated 5.3 years ago by 0 • written 7.8 years ago by ▴ 70
2
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1
reply
721
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how do meta-analysis with Na p-value of DESeq2 ?
deseq2 meta-analysis metaseq
updated 6.8 years ago by 41k • written 6.8 years ago by • 0
0
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0
replies
851
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Meta-Analysis chip-seq data
chip-seq meta-analysis
6.9 years ago rezapanahi222 • 0
0
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0
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800
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tools or package for meta-analysis of chip-seq result
chipseq meta-analysis
6.9 years ago rezapanahi222 • 0
2
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4
replies
1.6k
views
R package for Meta-Analysis of CHIP-Seq data
chipseq meta-analysis ubuntu
6.9 years ago rezapanahi222 • 0
6
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4
replies
2.9k
views
Meta-analysis of microarrays (and RNA-seq) data
meta-analysis
updated 7.0 years ago by ▴ 110 • written 7.1 years ago by ▴ 40
3
votes
6
replies
1.3k
views
Possible approach of compare/interpret RNA-Seq results with microarray gene expression describing the same phenotype
microarray rnaseq DEgenes meta-analysis limma
updated 7.2 years ago by ★ 28k • written 7.2 years ago by ▴ 830
0
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1
reply
1.1k
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meta analysis of p value data by metaseq package
rnaseq meta-analysis p values
7.3 years ago hassangiahi • 0
0
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1
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933
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Meta-analysis on rna-seq data without replicates
meta-analysis rnaseq metarnaseq
updated 7.5 years ago by 41k • written 7.5 years ago by ▴ 10
2
votes
5
replies
2.6k
views
Question on how to proceed and analyze 9 microarray datasets of two different platforms to perform meta-analysis
microarray meta-analysis cross-platform normalization statistical inference
updated 7.8 years ago by ▴ 110 • written 8.3 years ago by ▴ 80
3
votes
6
replies
2.0k
views
Comparison of DE lists from different datasets of same microarray platform
microarray DE-comparison meta-analysis scatter-plot limma
8.1 years ago Konstantinos Yeles ▴ 80
0
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0
replies
1.7k
views
MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
MetaDE meta-analysis
8.2 years ago alexvpickering ▴ 110
4
votes
4
replies
1.3k
views
Comparing DE probes from same-platform microarrays
limma microarray meta-analysis
updated 8.3 years ago by 50k • written 8.3 years ago by ▴ 10
4
votes
1
reply
2.3k
views
Meta-analysis of gene expression data by 'MetaDE'
r meta-analysis MetaDE
updated 8.4 years ago by ▴ 150 • written 8.8 years ago by ▴ 260
2
votes
4
replies
2.8k
views
Meta-Analysis after running limma on a normalized dataset
meta-analysis limma toptable
updated 8.8 years ago by ★ 28k • written 8.8 years ago by ▴ 20
20 results • Page 1 of 1
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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