Showing : meta-analysis • reset
0
votes
11
replies
3.8k
views
Remove NaN from a list or replace NaN with a value.
R meta-analysis
updated 2.7 years ago by • 0 • written 5.4 years ago by ▴ 10
0
votes
7
replies
1.5k
views
Problem using load_raw() function in crossmeta R package
cross meta-analysis crossmeta
3.2 years ago michael.s • 0
3
votes
6
replies
1.3k
views
Possible approach of compare/interpret RNA-Seq results with microarray gene expression describing the same phenotype
microarray rnaseq DEgenes meta-analysis limma
updated 7.2 years ago by ★ 28k • written 7.2 years ago by ▴ 830
3
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6
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2.0k
views
Comparison of DE lists from different datasets of same microarray platform
microarray DE-comparison meta-analysis scatter-plot limma
8.1 years ago Konstantinos Yeles ▴ 80
2
votes
5
replies
2.6k
views
Question on how to proceed and analyze 9 microarray datasets of two different platforms to perform meta-analysis
microarray meta-analysis cross-platform normalization statistical inference
updated 7.8 years ago by ▴ 110 • written 8.3 years ago by ▴ 80
4
votes
4
replies
1.3k
views
Comparing DE probes from same-platform microarrays
limma microarray meta-analysis
updated 8.3 years ago by 50k • written 8.3 years ago by ▴ 10
2
votes
4
replies
2.8k
views
Meta-Analysis after running limma on a normalized dataset
meta-analysis limma toptable
updated 8.8 years ago by ★ 28k • written 8.8 years ago by ▴ 20
2
votes
4
replies
1.6k
views
R package for Meta-Analysis of CHIP-Seq data
chipseq meta-analysis ubuntu
6.9 years ago rezapanahi222 • 0
6
votes
4
replies
2.9k
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Meta-analysis of microarrays (and RNA-seq) data
meta-analysis
updated 7.0 years ago by ▴ 110 • written 7.0 years ago by ▴ 40
0
votes
3
replies
1.8k
views
Algorithm for between and within microarray normalisation (for meta-analysis).
microarray meta-analysis gene expression
updated 5.3 years ago by 0 • written 7.8 years ago by ▴ 70
1
vote
2
replies
834
views
Meta-analysis of RNAseq data
RNAseq meta-analysis microarray public data sets
updated 5.2 years ago by ▴ 110 • written 5.2 years ago by ▴ 90
0
votes
1
reply
932
views
Meta-analysis on rna-seq data without replicates
meta-analysis rnaseq metarnaseq
updated 7.5 years ago by 41k • written 7.5 years ago by ▴ 10
0
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1
reply
1.1k
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meta analysis of p value data by metaseq package
rnaseq meta-analysis p values
7.3 years ago hassangiahi • 0
3
votes
1
reply
515
views
Meta-Analysis: Start with counts?
meta-analysis
updated 4.9 years ago by ★ 28k • written 4.9 years ago by • 0
4
votes
1
reply
2.3k
views
Meta-analysis of gene expression data by 'MetaDE'
r meta-analysis MetaDE
updated 8.4 years ago by ▴ 150 • written 8.7 years ago by ▴ 260
0
votes
1
reply
948
views
What does one-sided p-value in DESeq2 mean in biological terms?
one-sided nbinomWaldTest p-value meta-analysis DESeq2
updated 2.7 years ago by 41k • written 2.7 years ago by • 0
2
votes
1
reply
721
views
how do meta-analysis with Na p-value of DESeq2 ?
deseq2 meta-analysis metaseq
updated 6.8 years ago by 41k • written 6.8 years ago by • 0
0
votes
0
replies
846
views
Meta-Analysis chip-seq data
chip-seq meta-analysis
6.9 years ago rezapanahi222 • 0
0
votes
0
replies
795
views
tools or package for meta-analysis of chip-seq result
chipseq meta-analysis
6.9 years ago rezapanahi222 • 0
0
votes
0
replies
1.7k
views
MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
MetaDE meta-analysis
8.2 years ago alexvpickering ▴ 110
20 results • Page 1 of 1
Recent ...
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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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