19 days ago • updated 13 days ago
hortense96
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updated 6 months ago by
dorota.komar
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written 3.4 years ago by
Ankit
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5 months ago
aldea85
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updated 4 months ago by
Gordon Smyth
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written 4 months ago by
kyj2226
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updated 8 months ago by
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hayleyw
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updated 9 months ago by
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written 18 months ago by
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10 months ago
Krzysztof
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updated 7 months ago by
James W. MacDonald
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written 7 months ago by
henry-keen
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updated 9 months ago by
ATpoint
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written 9 months ago by
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updated 10 weeks ago by
James W. MacDonald
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written 10 weeks ago by
david.cheishvili
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Recent ...
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
•
0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Comment: Help with running egsea()
by
James W. MacDonald
65k
I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.
Answer: Help with running egsea()
by
James W. MacDonald
65k
There are no arguments to `egsea.base`, as it is meant only as a helper function to return the different methods. In addition, if you are u…
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