Showing : microarray • reset
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quality assessment of microarray using arrayQualityMetrics
Microarray Normalization arrayQualityMetrics Microarray Normalization arrayQualityMetrics
updated 15.6 years ago by ★ 13k • written 15.6 years ago by ▴ 70
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p values of time serie data with timecourse package?
Microarray GO Microarray GO
15.7 years ago Helen Zhou ▴ 150
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994
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Query regarding Bioconductor package
Microarray Microarray
updated 15.7 years ago by 21k • written 15.7 years ago by ▴ 120
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5
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Imitating Affy's own steps
Microarray Normalization GO Preprocessing gcrma Microarray Normalization GO Preprocessing
updated 15.7 years ago by 68k • written 15.7 years ago by ▴ 120
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Get gene expression data by averaging probes corresponding to the gene?
Microarray probe limma convert Microarray probe limma convert
15.7 years ago Gordon Smyth 53k
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968
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Time-course microarray tutorial
Microarray Microarray
15.7 years ago Colin Gillespie ▴ 30
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Get gene expression data by averaging probes corresponding to the gene?
Microarray probe convert Microarray probe convert
updated 15.7 years ago by 21k • written 15.7 years ago by ▴ 20
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Time-course microarray tutorial
Microarray Microarray
15.7 years ago Colin Gillespie ▴ 30
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1
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1.3k
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readMicroRnaAFE function in AgiMicroR package
miRNA Microarray Annotation PROcess miRNA Microarray Annotation PROcess
updated 15.7 years ago by ▴ 360 • written 15.7 years ago by ▴ 360
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how to generate a data frame containing all the coefficients of the different contrasts, the p-value and the adjusted p-value ?
Microarray Microarray
updated 15.7 years ago by ▴ 400 • written 15.7 years ago by ▴ 70
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Averaging duplicate probes in an RGList object
Microarray probe limma Microarray probe limma
15.7 years ago Tom Wenseleers ▴ 60
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6
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1.5k
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Ecoli antisense library
Microarray Microarray
updated 15.7 years ago by 68k • written 15.7 years ago by ▴ 140
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3
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2.5k
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getGEO - getting the .CEL files from GEO
Microarray Microarray
updated 15.7 years ago by 6.7k • written 15.7 years ago by ▴ 10
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AgiMicroRna package is not available at bioconductor or not in active form???
Microarray Network microRNA AgiMicroRna Microarray Network microRNA AgiMicroRna
updated 15.7 years ago by ▴ 60 • written 15.7 years ago by 21k
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LIMMA Array Weight analysis
Microarray Normalization limma Microarray Normalization limma
15.7 years ago GAO Yu ▴ 10
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1
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1.2k
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AgiMicroRna package is not available at bioconductor or not in active form???
Microarray microRNA Microarray microRNA
updated 15.7 years ago by 21k • written 15.7 years ago by ▴ 100
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2
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4.1k
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Limma and logistic regression
Microarray Cancer limma Microarray Cancer limma
updated 15.7 years ago by ▴ 340 • written 15.7 years ago by ★ 1.9k
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1
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clusterStab using a correlation distance
Microarray Cancer clusterStab Microarray Cancer clusterStab
updated 15.7 years ago by 68k • written 15.7 years ago by ★ 1.9k
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Reg: normalization of ArrayExpress data
Microarray Normalization GO ArrayExpress Microarray Normalization GO ArrayExpress
15.7 years ago Rohit Farmer ▴ 170
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COURSE: Microarray Analysis in R (Bioconductor) from Imperial College
Microarray Microarray
15.8 years ago North, Bernard V ▴ 120
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RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene
Microarray Normalization cdf oligo DTA Microarray Normalization cdf oligo DTA
updated 15.8 years ago by ★ 4.3k • written 15.8 years ago by ▴ 110
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RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene
Microarray Annotation Normalization Preprocessing cdf probe affy affyPLM oligo Microarray
updated 15.8 years ago by ★ 1.2k • written 15.8 years ago by ★ 4.3k
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4.9k
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ANOVA vs T-TEST vs eBayes
Microarray limma Microarray limma
updated 15.8 years ago by ★ 3.8k • written 15.8 years ago by ▴ 240
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1
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1.7k
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limma: writing down the matrix in an almost (?) factorial design experiment
Microarray DOSE Microarray DOSE
15.8 years ago Massimo Pinto ▴ 390
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7
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1.8k
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DNA micro-array normalization
Microarray probe Microarray probe
updated 15.8 years ago by 68k • written 15.8 years ago by ▴ 240
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1.2k
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Comparing gene set enrichment lists / GO terms
Microarray GO PROcess Microarray GO PROcess
15.8 years ago michael watson IAH-C ★ 3.4k
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Removing genes from linear model fit advice sought
Microarray Bayesian Microarray Bayesian
updated 15.8 years ago by ▴ 190 • written 15.8 years ago by ▴ 10
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4
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Converting data into MAlist to use in LIMMA
Sequencing Microarray Annotation Normalization affy convert Sequencing Microarray affy
updated 15.8 years ago by ★ 1.9k • written 15.8 years ago by ▴ 60
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Reading xls affymetrix file?
Microarray Microarray
updated 15.8 years ago by ▴ 410 • written 15.8 years ago by ▴ 240
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[BIOC COURSE] CSAMA10 - 14-18/June/2010 - Brixen (Italy)
Microarray Annotation Cancer Microarray Annotation Cancer
15.8 years ago stefano iacus ▴ 430
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1
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1.3k
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Hgu 133A HT arrays
Microarray Microarray
updated 15.8 years ago by 68k • written 15.8 years ago by ▴ 380
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824
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reproducibility between reads?
Microarray Genetics Microarray Genetics
15.8 years ago Naomi Altman ★ 6.0k
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HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 15.8 years ago by ★ 6.0k • written 15.8 years ago by ▴ 810
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FW: duplicates, technical and biological replicates + dividing a microarray into two parts
Microarray limma Microarray limma
updated 15.8 years ago by ★ 6.0k • written 15.8 years ago by ▴ 40
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1.1k
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question about lmFit model: double filtering not such a good idea?
Microarray limma Microarray limma
updated 15.8 years ago by ▴ 110 • written 15.8 years ago by ▴ 30
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1.9k
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Seeking assistance on ROC
Microarray GO Classification ROC graph ASSIGN Microarray GO Classification ROC graph
updated 15.8 years ago by ★ 13k • written 15.8 years ago by 21k
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HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 15.9 years ago by ★ 6.0k • written 15.9 years ago by ▴ 810
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1.5k
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duplicates, technical and biological replicates + dividing a microarray into two parts
Microarray limma Microarray limma
15.9 years ago Staninska, Ana, Dr. ▴ 40
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943
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Course: Statistical Microarray Analysis Using R & Bioconductor
Microarray Microarray
15.9 years ago North, Bernard V ▴ 120
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1.5k
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Bioinformatics Post doc position at UCSF
miRNA Microarray qPCR miRNA Microarray qPCR
15.9 years ago audrey ▴ 280
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5
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2.0k
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Best options for cross validation machine learning
Microarray Clustering Cancer Microarray Clustering Cancer
updated 15.9 years ago by ▴ 450 • written 15.9 years ago by ★ 1.9k
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6
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lumiR error
Microarray GO Microarray GO
updated 15.9 years ago by ★ 1.2k • written 15.9 years ago by ▴ 70
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affylmGUI MA-plot using Gene Symbols
Microarray Annotation hgu133plus2 probe affy affylmGUI Microarray Annotation hgu133plus2
15.9 years ago Chuming Chen ▴ 140
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2
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1.5k
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affylmGUI .cel loading problem
Microarray Microarray
updated 15.9 years ago by ▴ 500 • written 15.9 years ago by ▴ 10
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2
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3.3k
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Error messages from eBayes()(limma)
Microarray Microarray
updated 15.9 years ago by 68k • written 15.9 years ago by ▴ 80
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2
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1.5k
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methylumi
Microarray methylumi Microarray methylumi
updated 15.9 years ago by 21k • written 15.9 years ago by ▴ 70
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Agilent 2-color Microarray data analysis tutorial
Microarray Visualization Clustering Microarray Visualization Clustering
updated 15.9 years ago by 25k • written 15.9 years ago by ▴ 140
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1.1k
views
background correction within beadarray
Microarray beadarray Microarray beadarray
updated 15.9 years ago by ★ 1.1k • written 15.9 years ago by ▴ 10
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911
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BioC Course 27-29 Jan 10: Introduction to R and Bioconductor
Microarray Preprocessing Microarray Preprocessing
15.9 years ago Patrick Aboyoun ★ 1.6k
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1.1k
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Limma with contrasts
Microarray Normalization probe affy limma Microarray Normalization probe affy limma
updated 15.9 years ago by 68k • written 15.9 years ago by ▴ 60
2,319 results • Page 26 of 47
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Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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Commentator to sina.nassiri ▴ 130
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Popular Question to James W. MacDonald 68k
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