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minfi
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6
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5
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6.2k
views
minfi support of illumina Infinium methylationEPIC v2.0
methylationEPICv2.0
minfi
updated 6 months ago by
jay
▴ 10 • written 14 months ago by
luca.s
▴ 50
3
votes
2
replies
478
views
What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)"?
SBE
CpG
minfi
CpGinterrogation
5 months ago
kyj2226
• 0
2
votes
6
replies
1.5k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP
DMRcate
minfi
updated 6 weeks ago by
Tim Peters
▴ 180 • written 5 months ago by
rae.alshammari
▴ 10
2
votes
1
reply
162
views
minfi latest update for EPIC V2 chip
minfi
minfiDataEPIC
updated 10 days ago by
James W. MacDonald
65k • written 10 days ago by
e1271094
• 0
1
vote
4
replies
229
views
minfi::read.metharray.exp
minfiData
minfi
updated 23 days ago by
Basti
▴ 780 • written 25 days ago by
clacarion
• 0
0
votes
14
replies
2.0k
views
Error while preprocessing raw data from methylation array using minfi package
minfi
updated 3 months ago by
nguyen
• 0 • written 8 months ago by
Deepa
• 0
0
votes
3
replies
604
views
minfi bumphunter - probe IDs
minfi
bumphunter
updated 7 months ago by
Basti
▴ 780 • written 7 months ago by
dorota.komar
• 0
0
votes
1
reply
348
views
Error in reading my csv file in minfi
minfiDataEPIC
minfi
updated 5 months ago by
Basti
▴ 780 • written 5 months ago by
Ana
• 0
0
votes
11
replies
3.8k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate
minfi
updated 3 months ago by
Tim Peters
▴ 180 • written 7.1 years ago by
Jenny Drnevich
★ 2.0k
0
votes
0
replies
217
views
Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi
minfiDataEPIC
10 weeks ago
Felix
• 0
0
votes
7
replies
490
views
error in reading idat files and creating rgset
minfi
MethylationArray
updated 3 months ago by
James W. MacDonald
65k • written 3 months ago by
sharangiiv
• 0
0
votes
5
replies
967
views
minfi, limma, adjusting for cell counts - integrating the resoults of estimateCellCounts into the linear regression model
minfi
limma
7 months ago
dorota.komar
• 0
0
votes
2
replies
688
views
minfi differential methylation analysis errors
minfi
7 months ago
matthew.sinton
• 0
0
votes
1
reply
192
views
Matrix multiplication error to estimate telomere length
methylclockData
minfi
methylclock
minfidata
updated 11 weeks ago by
James W. MacDonald
65k • written 11 weeks ago by
sharangiiv
• 0
0
votes
2
replies
590
views
EPIC array hg38 annotation?
minfi
DMRcate
3 months ago
mycetes
• 0
0
votes
4
replies
262
views
Minfi - estimatecellscount
min
minfi
updated 18 days ago by
James W. MacDonald
65k • written 7 weeks ago by
clacarion
• 0
0
votes
9
replies
3.1k
views
clarification about bumphunter value output
minfi
bumphunter
updated 11 months ago by
Jennifer Dehner
• 0 • written 6.2 years ago by
src3
• 0
0
votes
1
reply
408
views
Two EPIC Methylation Array Analysis Questions
minfiDataEPIC
minfi
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
phelankj
• 0
0
votes
0
replies
272
views
Normalization in methylation analysis
Methylation
minfi
preprocessQuantile
MethylationArrayData
preprocessFunnorm
5 months ago
kyj2226
• 0
0
votes
2
replies
585
views
ageData (minfi pipeline)
ageData
missMethyl
differentialvariability
minfi
updated 7 weeks ago by
CHEN
• 0 • written 12 months ago by
Saanchi
• 0
20 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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Vincent J. Carey, Jr.
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Koen Van den Berge
▴ 180
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shepherl
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Ken C
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Johannes Rainer
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