Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
monocle
•
reset
1
vote
5
replies
2.5k
views
Monocle causes R session to crash
software error
monocle
updated 6.8 years ago by
kevin.rue
▴ 350 • written 8.5 years ago by
galib36
▴ 10
1
vote
4
replies
2.1k
views
Trajectory analysis for single cell sequencing
single cell
trajectory analysis
tscan
monocle
updated 3.7 years ago by
Aaron Lun
★ 28k • written 3.7 years ago by
lirongrossmann
▴ 40
0
votes
3
replies
1.3k
views
Batch effects and model matrices
deseq2
single cell
monocle
updated 6.9 years ago by
Michael Love
41k • written 6.9 years ago by
bvernot
• 0
5
votes
3
replies
1.4k
views
Setting gene expression thresholds for trajectory analysis using Monocle
monocle
differential gene expression
detectgenes function
Tutorial
5.3 years ago
S.Webb6
▴ 40
1
vote
2
replies
1.7k
views
Error message running DE-test in Monocle
monocle
cummerbund
DE
rnaseq
updated 8.8 years ago by
ksekine
• 0 • written 9.0 years ago by
Jon Bråte
▴ 250
0
votes
2
replies
331
views
Singlecell protein surface (ADT) pseudotime techniques
monocle
slingshot
7 months ago
EspressoKris
▴ 10
0
votes
1
reply
2.3k
views
Pseudotime analysis on bulk RNASeq using monocle
pseudotime
monocle
dimensionality
4.3 years ago
pbachali
▴ 50
0
votes
1
reply
2.9k
views
How to customize the color in 'plot_cell_trajectory' function
scRNA seq
monocle
updated 3.8 years ago by
Kevin Blighe
★ 3.9k • written 3.8 years ago by
initialqy
• 0
3
votes
1
reply
1.1k
views
Normalizing vs RNA content in scRNAseq data
monocle
scran
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
ankur.chakravarthy.10
▴ 40
1
vote
1
reply
164
views
Differentially expressed genes in monocle pseudotime
monocle
updated 10 days ago by
Gordon Smyth
50k • written 12 days ago by
kthapa
• 0
0
votes
1
reply
1.7k
views
monocle: Error in if (cds@expressionFamily@vfamily %in% c("negbinomial", "negbinomial.size"))
monocle
6.2 years ago
Mehmet Ilyas Cosacak
• 0
0
votes
1
reply
1.1k
views
Monocle group sizes
monocle
7.1 years ago
ribioinfo
▴ 100
0
votes
1
reply
1.5k
views
Converting scater-normalized UMI data to Monocle CellDataSet
scater
scran
umi
monocle
updated 6.0 years ago by
Aaron Lun
★ 28k • written 6.0 years ago by
supremerulersuraj
• 0
1
vote
1
reply
2.0k
views
Mean Expression Calculation scRNA-seq (All cells or only Expressed Cells)
scrnaseq
monocle
updated 6.0 years ago by
davide risso
▴ 950 • written 6.0 years ago by
chitsazanalex
▴ 10
0
votes
1
reply
3.5k
views
error in monocle.
monocle
updated 7.1 years ago by
driver.ian
• 0 • written 7.1 years ago by
ikwak
• 0
0
votes
1
reply
4.6k
views
monocle error at orderCells
scRNA
monocle
packages
Tutorial
4.7 years ago
444579004
• 0
0
votes
0
replies
1.8k
views
Monocle-strange differential expression results
monocle
differential expression
8.3 years ago
sunil.mangalam
• 0
0
votes
0
replies
2.5k
views
Monocle plot_pseudotime_heatmap : Error in cutree(tree, cutree_n) : elements of 'k' must be between 1 and 3
R
monocle
6.8 years ago
A.H
• 0
0
votes
0
replies
1.4k
views
Documentation of "branch_states" and "branch_labels" arguments
monocle
6.8 years ago
kevin.rue
▴ 350
0
votes
0
replies
1.0k
views
Basic Question: How to get appropriate pDATA structure in monocle from cufflinks/cuffnorm
cufflinks
monocle
6.9 years ago
alexandriapinto1
▴ 10
0
votes
0
replies
1.4k
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle
bugs
8.4 years ago
wanghao1993333
• 0
0
votes
0
replies
450
views
weighting sample group
monocle
SingleCell
DifferentialExpression
19 months ago
Sogand
• 0
22 results • Page
1 of 1
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
Awards
• All
Popular Question
to
Leo Lahti
▴ 40
Scholar
to
James W. MacDonald
65k
Popular Question
to
shepherl
3.8k
Scholar
to
Michael Love
41k
Supporter
to
JKim
• 0
Locations
• All
France,
2 minutes ago
WEHI, Melbourne, Australia,
17 minutes ago
Australia,
23 minutes ago
Melbourne, Australia,
56 minutes ago
INDIA,
1 hour ago
Traffic: 678 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6