Bioconductor Motifs

Showing : motifs • reset

votes

replies

1.2k

views

MotifbreakR R motifs

6.4 years ago camerond • 0

votes

replies

1.1k

views

pwm motifs jaspar meme motif analysis

6.8 years ago rbronste ▴ 60

votes

replies

1.1k

views

motifs TF peakset plots

8.6 years ago rbronste ▴ 60

votes

1.7k

views

genomation motifs

updated 9.1 years ago by altuna akalin ▴ 20 • written 9.1 years ago by sarah.blackstone7734 • 0

votes

replies

1.6k

views

illumina 450k motifs meme

9.7 years ago Gustavo Fernández Bayón ▴ 440

5 results • Page 1 of 1

Recent ...

Replies

Answer: Help with defining groups by Gordon Smyth 53k

Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…

Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760

The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0

Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …

Votes

Answer: ordinary t from limma [was: How would I normally compare swirl?]

Comment: readDNAStringSet with non DNA characters

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

Awards • All