Bioconductor Network

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366

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Network cluster WGCNA RNASeq

updated 9 weeks ago by James W. MacDonald 63k • written 9 weeks ago by chiwut.wong • 0

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178

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Bioconductor Network RNASeqData SystemsBiology

11 weeks ago info ▴ 10

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302

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Network syntenet Clustering coefficient

3 months ago • updated 12 weeks ago Alexandros • 0

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375

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correlation wgcna network

10 months ago pharamac • 0

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1.5k

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syntenet synteny Network

written 10 months ago by Alexandros • 0

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406

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wgcna Network WGCNA minModuleSize

10 months ago bioinformaticssrm2011 • 0

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455

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Network

11 months ago Senthil • 0

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706

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Network RNASeq WGCNA

updated 8 months ago by shuo • 0 • written 22 months ago by jms2520 • 0

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2.8k

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WGCNA R network co-expression

updated 8 months ago by Peter Langfelder ★ 2.8k • written 4.4 years ago by avelarbio46 ▴ 10

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Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k

I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…

Comment: Biostrings error at retrieving protein sequences by Hervé Pagès 16k

Yes, but you need to put the clean names back on the AAStringSet object: ``` names(protein_sequences) <- gsub(" .*", "", names(protein_sequ…

Comment: Exporting DESeq2 filtered results by camillab. ▴ 10

thanks! I didn't`t notice that. I will cancel it now!

Votes

Batch Effect in DESeq2, how to control, how to remove it, how to address biological question

A: BiomaRt Arabidopsis genome unavailable

Answer: enrichKEGG

A: Effect of lfcThreshold on p-value in DESeq2

Comment: Mixed up sample info with plotPCA

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