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Online course: Network Analysis in Systems Biology with R/Bioconductor
SystemsBiology
Bioconductor
Network
3 months ago
info
▴ 10
0
votes
1
reply
596
views
WGCNA Soft Power
Normalization
DESeq2
Network
RNASeqData
updated 7 months ago by
ATpoint
★ 4.4k • written 7 months ago by
Ömür Koray
• 0
1
vote
1
reply
1.0k
views
How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network
RCy3
updated 8 months ago by
alex.pico
▴ 20 • written 8 months ago by
David R
▴ 90
0
votes
2
replies
569
views
StringDB: Cannot use payload mechanism to colour nodes
RNASeqData
STRINGdb
DifferentialExpression
GraphAndNetwork
Network
9 months ago
Luca
• 0
0
votes
2
replies
1.3k
views
using WGCNA, positive or negative corrlation between genes composing modules.
correlation
wgcna
network
updated 3 months ago by
mariakenneth147
• 0 • written 21 months ago by
pharamac
• 0
5 results • Page
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Comment: ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
by
semra
• 0
``` >BiocManager::install(version = "3.19", lib = "~/R/x86_64-pc-linux-gnu-library/4.4") 'getOption("repos")' replaces Bioconductor standar…
Comment: [DESeq2] time series strain-specific differences over time
by
Michael Love
42k
I will say it is possible but a bit cumbersome to perform an LRT for 60 vs 0. You would have to re-run `DESeq()` or minimally `nbinomLRT` w…
Comment: [DESeq2] time series strain-specific differences over time
by
Michael Love
42k
Correct: https://www.bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#i-ran-a-likelihood-ratio-test-but-results…
Comment: concentration tables suitable as input for new packages?
by
katja.danielzik
• 0
Thank you for your reply! "Spectra" indeed is another example for software processing MS-data to p.e. concentration tables. My package howe…
Comment: AffylmGUI does not start wit R 4.4.1
by
richardallenfriedmanbrooklyn
▴ 20
Gordon, Thank you as always. I have tried the instructions you gave before my most recent post. The patch is almost certainly beyond my ca…
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C: [DESeq2] time series strain-specific differences over time
Comment: [DESeq2] time series strain-specific differences over time
Comment: [DESeq2] time series strain-specific differences over time
Comment: [DESeq2] time series strain-specific differences over time
Comment: [DESeq2] time series strain-specific differences over time
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