Bioconductor Network

Showing : network • reset

vote

replies

1.7k

views

syntenet synteny Network

written 12 months ago by Alexandros • 0

votes

763

views

Network cluster WGCNA RNASeq

updated 4 months ago by James W. MacDonald 64k • written 4 months ago by chiwut.wong • 0

votes

replies

274

views

Bioconductor Network RNASeqData SystemsBiology

4 months ago info ▴ 10

votes

replies

393

views

Network syntenet Clustering coefficient

5 months ago • updated 4 months ago Alexandros • 0

votes

787

views

Network RNASeq WGCNA

updated 10 months ago by shuo • 0 • written 2.0 years ago by jms2520 • 0

votes

replies

3.0k

views

WGCNA R network co-expression

updated 10 months ago by Peter Langfelder ★ 2.8k • written 4.6 years ago by avelarbio46 ▴ 10

6 results • Page 1 of 1

Recent ...

Replies

Comment: DuplicateCorrelation() block by duplicate sample or by cell line ? by Gimena • 0

Hi James, Yes, these are complete cases. every line has all the treatment groups and technical replicates.

Comment: DuplicateCorrelation() block by duplicate sample or by cell line ? by Gimena • 0

I am sorry for the confusion. It goes like this: 3 drug exposures (vehicle, low and high dose) x 2 replicates per condition: technical re…

Comment: How does Deseq2 deal with the row with zero when calculating size factors by jiakang • 0

Thanks for your quick reply. I understand and have noticed the code you mentioned above. > the size factors results of sfType = "poscount…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Yes. I considered genome wide p value as cutoff.

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

It sounds like you have more overlaps than by chance, is that what you would like to see?

Votes

Attempting to import SBML file using R

Answer: RNASeq time course analysis, missing time points for control

Answer: biomaRt not working - lazy table error

Answer: Confused about the CPM and TMM normalization in edgeR

Answer: Differential gene expression analysis

Awards • All