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outlier
•
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4
votes
5
replies
6.5k
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outlier detection of RNAseq samples
deseq2
rnaseq
PCA
hierarchical clustering
outlier
7.4 years ago
wd
▴ 30
1
vote
7
replies
4.6k
views
DESeq2 outlier detection not filtering
DESeq2
outlier
RNASeq
updated 9.4 years ago by
Michael Love
41k • written 9.4 years ago by
kenneth.daily
• 0
1
vote
8
replies
1.9k
views
[Outlier Gene removal] - One sample with outlier counts for some genes
RNAseq
DESeq2
outlier
counts
DE analysis
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
DcL-A
• 0
2
votes
3
replies
1.5k
views
RNAseq outlier is a critical sample
rnaseq
outlier
statistics
batch effect
updated 7.9 years ago by
Gordon Smyth
50k • written 7.9 years ago by
grastalt27
• 0
1
vote
1
reply
1.3k
views
arrayQualityMetrics for outlier detection
arrayQualityMetrics
Microarray
Outlier
updated 8.4 years ago by
Wolfgang Huber
★ 13k • written 8.4 years ago by
horcsct
▴ 10
0
votes
2
replies
1.2k
views
Which genes are outliers in DESeq2?
DESeq2
RNAseq
outlier
updated 14 months ago by
ATpoint
★ 4.0k • written 14 months ago by
James
• 0
1
vote
3
replies
732
views
DE analysis outlier removal
deseq2
outlier
normalization
removal
updated 4.1 years ago by
Michael Love
41k • written 4.1 years ago by
knholm
• 0
0
votes
1
reply
438
views
Outlier removal outcome
Outlier
updated 13 months ago by
ATpoint
★ 4.0k • written 13 months ago by
sanchita.bhattacharya
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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James W. MacDonald
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Gordon Smyth
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Chris
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