Bioconductor Pcamethods

Showing : pcamethods • reset

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pcaMethods

12 weeks ago • updated 11 weeks ago yousavdj • 0

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361

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pcaMethods pca

updated 11 weeks ago by James W. MacDonald 65k • written 11 weeks ago by yousavdj • 0

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1.2k

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PCAtools pcaExplorer pcaMethods

updated 22 months ago by Federico Marini ▴ 150 • written 22 months ago by m610110001 • 0

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2.1k

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OutlierD pcaMethods MicroarrayData Microarray

3.0 years ago waiyin0923 • 0

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545

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pcaMethods

3.0 years ago Gero • 0

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562

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pcaMethods

3.3 years ago k.vitting.seerup ▴ 120

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758

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pcamethods

updated 5.5 years ago by James W. MacDonald 65k • written 5.5 years ago by johnnytam100 • 0

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pcamethods missing data

7.1 years ago eli-sava • 0

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1.2k

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pcamethods

updated 7.1 years ago by James W. MacDonald 65k • written 7.1 years ago by allantanaka11 • 0

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1.1k

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metaboliteData pcaMethods pcamethods r package metabolite Data

updated 7.4 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by lukasz.galecki ▴ 10

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pcamethods r

8.1 years ago stolarek.ir • 0

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1.3k

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pcaMethods pcaMethods

10.2 years ago Julian Gehring ★ 1.3k

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pcaMethods pcaMethods

10.2 years ago Guest User ★ 13k

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pcaMethods pcaMethods

13.1 years ago Alfons Gonzalez ▴ 10

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pcaMethods pcaMethods

13.2 years ago Manca Marco PATH ▴ 340

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809

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Clustering pcaMethods Clustering pcaMethods

14.0 years ago avinash gupta ▴ 130

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1.6k

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pcaMethods pcaMethods

updated 15.4 years ago by Wolfgang Huber ★ 13k • written 15.4 years ago by Yury Bukhman ▴ 20

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1.3k

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aroma.light pcaMethods aroma.light pcaMethods

updated 15.6 years ago by Sean Davis 21k • written 15.6 years ago by Tillinghast, Guy, M.D. ▴ 30

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impute pcaMethods impute pcaMethods

16.5 years ago De-Jian ZHAO ▴ 240

19 results • Page 1 of 1

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

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