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pcamethods
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2
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7
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How do you post on this forum?
pcaMethods
12 weeks ago • updated 11 weeks ago
yousavdj
• 0
0
votes
3
replies
363
views
Biplot has a secondary x-axis and y-axis
pcaMethods
pca
updated 11 weeks ago by
James W. MacDonald
65k • written 11 weeks ago by
yousavdj
• 0
0
votes
3
replies
1.2k
views
I got error when visualizing my PCA
PCAtools
pcaExplorer
pcaMethods
updated 22 months ago by
Federico Marini
▴ 150 • written 22 months ago by
m610110001
• 0
0
votes
2
replies
2.1k
views
How to exclude outlier (Microarray ) from PCA in R
OutlierD
pcaMethods
MicroarrayData
Microarray
3.0 years ago
waiyin0923
• 0
0
votes
0
replies
545
views
PCA theoretical question for applied case
pcaMethods
3.0 years ago
Gero
• 0
0
votes
0
replies
562
views
pcaMethods percent missing interpretation
pcaMethods
3.3 years ago
k.vitting.seerup
▴ 120
0
votes
1
reply
758
views
Getting loadings of components from pcaMethods
pcamethods
updated 5.5 years ago by
James W. MacDonald
65k • written 5.5 years ago by
johnnytam100
• 0
0
votes
0
replies
823
views
imputing data using pcaMethods with large amounts of missing data in rows
pcamethods
missing data
7.1 years ago
eli-sava
• 0
0
votes
4
replies
1.2k
views
Error from pcaMethods and psych packages from biocLite("pcaMethods")
pcamethods
updated 7.1 years ago by
James W. MacDonald
65k • written 7.1 years ago by
allantanaka11
• 0
2
votes
1
reply
1.1k
views
R package "metaboliteData" for package "pcaMethods"
metaboliteData
pcaMethods
pcamethods
r package
metabolite Data
updated 7.4 years ago by
Valerie Obenchain
★ 6.8k • written 7.4 years ago by
lukasz.galecki
▴ 10
1
vote
3
replies
1.8k
views
PCA clusters by replicates not by study groups
pcamethods
r
8.1 years ago
stolarek.ir
• 0
0
votes
3
replies
1.3k
views
Problems with robustPca in pcaMethods
pcaMethods
pcaMethods
10.2 years ago
Julian Gehring
★ 1.3k
0
votes
0
replies
1.1k
views
Problems with robustPca in pcaMethods
pcaMethods
pcaMethods
10.2 years ago
Guest User
★ 13k
0
votes
0
replies
1.0k
views
Troubles installing pcaMethods on R2.12.1
pcaMethods
pcaMethods
13.1 years ago
Alfons Gonzalez
▴ 10
0
votes
0
replies
1.1k
views
Troubles installing pcaMethods on R2.12.1
pcaMethods
pcaMethods
13.2 years ago
Manca Marco PATH
▴ 340
0
votes
0
replies
809
views
Bioconductor Digest, Vol 87, Issue 17
Clustering
pcaMethods
Clustering
pcaMethods
14.0 years ago
avinash gupta
▴ 130
0
votes
2
replies
1.6k
views
screeplot in package pcaMethods fails
pcaMethods
pcaMethods
updated 15.4 years ago by
Wolfgang Huber
★ 13k • written 15.4 years ago by
Yury Bukhman
▴ 20
0
votes
2
replies
1.3k
views
package R.oo (or R.00?), within package R.classes, and function robustPca
aroma.light
pcaMethods
aroma.light
pcaMethods
updated 15.6 years ago by
Sean Davis
21k • written 15.6 years ago by
Tillinghast, Guy, M.D.
▴ 30
0
votes
0
replies
1.6k
views
when to impute the missing value?
impute
pcaMethods
impute
pcaMethods
16.5 years ago
De-Jian ZHAO
▴ 240
19 results • Page
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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