Bioconductor PlotPCA

Showing : plotPCA • reset

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deseq2 rlog variancestabilizingtransformation plotpca pca

6.6 years ago lirongrossmann ▴ 80

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plotMA ggplot2 plotPCA DESeq2

updated 7 months ago by Michael Love 42k • written 7 months ago by sara.jacobson • 0

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plotPCA deseq2 labels

updated 7.3 years ago by Federico Marini ▴ 150 • written 7.3 years ago by al-ash ▴ 50

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DESeq2 plotPCA

2.3 years ago • updated 2.2 years ago synat.keam • 0

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DESeq2 plotPCA rlog transformation vsd

6.8 years ago Jane Merlevede ▴ 90

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deseq2 plotPCA PCA rna-seq

8.0 years ago newsomew13 • 0

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deseq2 biplot plotpca

updated 4.3 years ago by Michael Love 42k • written 4.3 years ago by ecg1g15 ▴ 20

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plotPCA PCA

updated 13 months ago by hediatnani • 0 • written 13 months ago by Yijing • 0

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plotpca DESeq2

2.3 years ago bjen731 ▴ 10

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plotPCA DESeq2 RUVSeq removebatcheffect()

3.0 years ago elizabethe819 • 0

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377

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Rstudio plotPCA DESeq2

5 months ago yee • 0

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876

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DESeq2 RNASeq plotpca

updated 3.3 years ago by Michael Love 42k • written 3.3 years ago by s1760083 • 0

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645

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deseq2 PlotPCA draw.triple.venn

updated 5.7 years ago by Michael Love 42k • written 5.7 years ago by N. Perera • 0

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deseq2 plotpca

updated 5.7 years ago by Michael Love 42k • written 5.7 years ago by snp31 • 0

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deseq2 plotpca PCa

updated 6.5 years ago by Michael Love 42k • written 6.5 years ago by lirongrossmann ▴ 80

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pca plotpca

7.6 years ago marianarochadesouza • 0

16 results • Page 1 of 1

Recent ...

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

> Any suggestions for methylation data segmentation? I think the same segmentation can be used.

Comment: deseq2 results by swbarnes2 ★ 1.3k

Cross-posted https://www.biostars.org/p/9594331/#9594458

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k

The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.

Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k

From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …

Votes

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

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Teacher to Michael Love 42k