Bioconductor Plotma

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2.4k

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normalization deseq2 plotMA meanSDplot

8.7 years ago aravenscraft • 0

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964

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agilent single channel plotMA background correction

updated 5.9 years ago by Gordon Smyth 50k • written 5.9 years ago by CantExitVIM ▴ 10

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4.8k

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deseq2 rnaseq plotMA deseq rna-seq

updated 8.1 years ago by Michael Love 41k • written 8.1 years ago by sjs0282 • 0

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3.7k

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limma plotMA

updated 8.7 years ago by Gordon Smyth 50k • written 8.7 years ago by Lisa Cohen ▴ 50

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640

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plotMA ggplot2 plotPCA DESeq2

updated 7 months ago by Michael Love 41k • written 7 months ago by sara.jacobson • 0

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2.6k

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deseq2 plotma

6.6 years ago Yvan Wenger ▴ 50

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628

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matrixsubset DESeq2 plotMA

updated 3.1 years ago by Michael Love 41k • written 3.1 years ago by l.troxler ▴ 10

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4.9k

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rstudio r plotMA

6.9 years ago g.k • 0

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1.1k

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deseq2 plotMA rnaseq logfoldchange

updated 6.2 years ago by Michael Love 41k • written 6.2 years ago by ap_vc21 • 0

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893

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deseq2 plotMA rnaseq community analysis asymmetry

updated 4.2 years ago by Michael Love 41k • written 4.2 years ago by chaco001 • 0

10 results • Page 1 of 1

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Answer: Trim/Filter out-of-bounds GRanges by Michael Love 41k

https://support.bioconductor.org/p/73432/#73448

Comment: Couldn't connect to server while using "pathways" by Michael Love 41k

You've put the tag "DESeq2" which results in an email to the maintainer, me, that I should respond to a post on the support site. Can you …

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Vincent J. Carey, Jr. 6.7k

btw that was run on M1 mac

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Vincent J. Carey, Jr. 6.7k

the test is not portable > aa <- aa_mutmat(acc = "MIYS930101", aaindex = "aaindex2") > str(aa) num [1:20, 1:20] 0.34 -0.0…

Comment: Method to find pathways different between 2 groups by Chris • 0

Sorry for not clear! Glad to know camera() is widely used. I just try to find papers use this method for learning purpose. Which gives more…

Votes

Answer: Method to find pathways different between 2 groups

Comment: Trying to use enrichGO

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

Awards • All

Popular Question to Vincent J. Carey, Jr. 6.7k

Scholar to ATpoint ★ 4.1k