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plotma
•
reset
1
vote
1
reply
4.9k
views
MA plot in R
rstudio
r
plotMA
6.9 years ago
g.k
• 0
0
votes
2
replies
4.8k
views
PlotMA Filters for DeSEQ2 ; adjusting script
deseq2
rnaseq
plotMA
deseq
rna-seq
updated 8.1 years ago by
Michael Love
41k • written 8.1 years ago by
sjs0282
• 0
3
votes
5
replies
3.7k
views
limma::plotMA displays one sample vs. others
limma
plotMA
updated 8.7 years ago by
Gordon Smyth
50k • written 8.7 years ago by
Lisa Cohen
▴ 50
1
vote
8
replies
2.6k
views
How to exactly replicate the results from plotMA in DESeq2 ?
deseq2
plotma
6.6 years ago
Yvan Wenger
▴ 50
4
votes
3
replies
2.4k
views
[DESeq2] normalization doesn't remove my mean-variance trend
normalization
deseq2
plotMA
meanSDplot
8.7 years ago
aravenscraft
• 0
1
vote
3
replies
1.1k
views
plotMA (DESeq2) Issue
deseq2
plotMA
rnaseq
logfoldchange
updated 6.2 years ago by
Michael Love
41k • written 6.2 years ago by
ap_vc21
• 0
1
vote
2
replies
964
views
Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent
single channel
plotMA
background correction
updated 5.9 years ago by
Gordon Smyth
50k • written 5.9 years ago by
CantExitVIM
▴ 10
0
votes
1
reply
893
views
What does an asymmetrical MA plot indicate and how do I know if it means I've made an error?
deseq2
plotMA
rnaseq
community analysis
asymmetry
updated 4.2 years ago by
Michael Love
41k • written 4.2 years ago by
chaco001
• 0
1
vote
5
replies
640
views
Mixed up sample info with plotPCA
plotMA
ggplot2
plotPCA
DESeq2
updated 7 months ago by
Michael Love
41k • written 7 months ago by
sara.jacobson
• 0
1
vote
1
reply
628
views
plotMA difference using or not a sub matrix
matrixsubset
DESeq2
plotMA
updated 3.1 years ago by
Michael Love
41k • written 3.1 years ago by
l.troxler
▴ 10
10 results • Page
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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Michael Love
41k
Popular Question
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Malcolm Cook
★ 1.6k
Teacher
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Gordon Smyth
50k
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to
priyanka.m
• 0
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Vincent J. Carey, Jr.
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