Bioconductor Plotmds

Showing : plotmds • reset

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3.8k

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edgeR plotmds differential gene expression MDS mdsplot

updated 5.4 years ago by Gordon Smyth 50k • written 5.4 years ago by ilovesuperheroes1993 • 0

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5.8k

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limma edger plotmds tmm masigpro

6.4 years ago dacaba.92 ▴ 10

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1.5k

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edger plotmds

6.6 years ago fawazfebin ▴ 60

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1.9k

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plotMDS limma

updated 11 months ago by Gordon Smyth 50k • written 11 months ago by liujy4 • 0

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1.3k

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plotMDS PCA RNASeq MDS

updated 2.2 years ago by Gordon Smyth 50k • written 2.2 years ago by Raito92 ▴ 60

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1.2k

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limma plotMDS

2.8 years ago jamie.gearing ▴ 60

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846

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plotMDS limma

9 months ago Cen • 0

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737

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plotMDS Cell lines limma

updated 5.7 years ago by Gordon Smyth 50k • written 5.7 years ago by Alexander Azarian ▴ 30

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1.6k

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affymetrix microarrays sva combat sva batch effect plotMDS

updated 7.7 years ago by Jeff Leek ▴ 650 • written 7.7 years ago by svlachavas ▴ 830

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2.0k

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edger plotmds

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by mictadlo ▴ 10

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1.2k

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rgl plot3d plotmds

8.1 years ago Adam • 0

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931

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tree bootstrap dgelist plotmds

6.2 years ago Larry K. • 0

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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