Bioconductor Processamplicons

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edger processamplicons sgrna crispr

updated 16 months ago by hyejo • 0 • written 6.2 years ago by Assa Yeroslaviz ★ 1.5k

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edgeR processamplicons memory problem

5.9 years ago sdalin • 0

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processamplicons edgeR

updated 6.1 years ago by shepherl 3.9k • written 6.1 years ago by sdalin • 0

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EdgeR CRISPR Barcode processamplicons

updated 6.1 years ago by sdalin • 0 • written 7.3 years ago by neggersjasper • 0

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edger sgrna processamplicons

6.2 years ago Assa Yeroslaviz ★ 1.5k

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processamplicons

updated 8.1 years ago by Matthew Ritchie ▴ 1000 • written 8.1 years ago by lucia.caceres • 0

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processamplicons

8.1 years ago lucia.caceres • 0

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processamplicons edger barcode

8.1 years ago lucia.caceres • 0

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edgeR processamplicons shrna

updated 8.5 years ago by thomas.leete • 0 • written 8.7 years ago by Anne Deslattes Mays ▴ 10

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edger processamplicons rstudio

updated 9.1 years ago by Aaron Lun ★ 28k • written 9.1 years ago by thomas.leete • 0

10 results • Page 1 of 1

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Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100

Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz

Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k

The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …

Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k

You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.

Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0

In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…

Answer: Design formula, numeric contrast, and lfcshrink in deseq2 by Michael Love 42k

For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…

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Comment: Most enriched pathway is not expressed when modifying universe parameter

Time-course, comparison of two groups

Answer: Behaviour of featureCounts when quantifying multi-mapping reads

Answer: GESA with certain gene list returns no result with human genom, but many result

Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`

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