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reactome.db
•
reset
3
votes
4
replies
2.3k
views
Download of package ‘reactome.db’ failed (Ubuntu, not for Windows)
reactome.db
ReactomePA
3.2 years ago
florianjt
• 0
5
votes
6
replies
2.5k
views
Download errors during Bioconductor 3.12 update
reactome.db
Bioconductor
BiocManager
updated 3.5 years ago by
Martin Morgan
25k • written 3.5 years ago by
Michael Steinbaugh
▴ 90
0
votes
5
replies
1.9k
views
ReactomePA / Reactome: Crash when plotting
reactomepa
reactomepa reactome bioconductor viewpathway
reactome.db
reactome
5.9 years ago
martin.busch
• 0
3
votes
4
replies
1.9k
views
Enrichment Analysis for Shot-gun proteomics data using the ReactomePA package: problem with identities loss
reactomepa
reactome.db
reactome
proteomics
uniprot accessions
updated 6.5 years ago by
willem.ligtenberg
▴ 150 • written 6.5 years ago by
Miguel.Cosenza
▴ 10
0
votes
1
reply
1.1k
views
Retrieve the reactome ID of a protein
reactome.db
updated 6.8 years ago by
alserg
▴ 260 • written 6.8 years ago by
Lluís Revilla Sancho
▴ 730
0
votes
5
replies
2.6k
views
reactome.db installation problem
reactome.db
bioclite
7.0 years ago
Jan-Jaap
• 0
6
votes
15
replies
2.9k
views
Change in pathway IDs scheme in reactome.db
reactome.db
fgsea
updated 7.0 years ago by
willem.ligtenberg
▴ 150 • written 7.0 years ago by
alserg
▴ 260
3
votes
7
replies
2.1k
views
Misleading information in reactome.db
reactome.db
7.2 years ago
Lluís Revilla Sancho
▴ 730
1
vote
1
reply
1.3k
views
Unable to see reactome.db dbschema
reactome.db
rsqlite
updated 7.3 years ago by
willem.ligtenberg
▴ 150 • written 7.3 years ago by
Lluís Revilla Sancho
▴ 730
3
votes
5
replies
1.7k
views
Selecting few ids from reactome.db
annotationdbi
reactome.db
bug
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
Lluís Revilla Sancho
▴ 730
0
votes
6
replies
1.5k
views
Is reactome.db still updated?
reactome.db
annotation
pathways
7.5 years ago
Guido Hooiveld
★ 3.9k
5
votes
6
replies
2.5k
views
Reactome pathway names from IDs?
biomart
reactome
reactome.db
id
updated 8.5 years ago by
James W. MacDonald
65k • written 8.5 years ago by
enricoferrero
▴ 660
0
votes
1
reply
1.3k
views
Reactome's bug of feature?
reactome.db
updated 8.7 years ago by
willem.ligtenberg
▴ 150 • written 8.7 years ago by
petyuk
▴ 70
8
votes
14
replies
3.8k
views
reactome.db is not updated?
genesetenrichment
pathways
reactome.db
updated 9.1 years ago by
willem.ligtenberg
▴ 150 • written 9.5 years ago by
Guangchuang Yu
★ 1.2k
14 results • Page
1 of 1
Recent ...
Replies
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga
by
James W. MacDonald
65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Votes
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
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