Bioconductor RNA seq

Showing : RNA seq • reset

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2.6k

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deseq2 mahattan plot RNA Seq

updated 3.5 years ago by bernatgel ▴ 150 • written 4.5 years ago by adeler001 • 0

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3.2k

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batch effect limma rna seq DE

updated 4.0 years ago by Steve Lianoglou ★ 13k • written 4.0 years ago by svlachavas ▴ 830

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641

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RNA seq cpm

updated 4.0 years ago by Kevin Blighe ★ 3.9k • written 4.0 years ago by isabel.pieterse • 0

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867

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sgseq alternative splicing rna seq

updated 4.4 years ago by Leonard Goldstein ▴ 170 • written 4.4 years ago by 116100016 • 0

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884

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edger RNA Seq

updated 4.4 years ago by James W. MacDonald 65k • written 4.4 years ago by abf ▴ 30

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485

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rna seq

4.4 years ago adeler001 • 0

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764

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rna seq SGSeq Alternative splicing

updated 4.5 years ago by Leonard Goldstein ▴ 170 • written 4.5 years ago by 116100016 • 0

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545

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deseq2 likelihood ratio rna seq wald test

updated 4.6 years ago by Michael Love 41k • written 4.6 years ago by adeler001 • 0

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934

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volcano plot rna seq

updated 4.6 years ago by Michael Love 41k • written 4.6 years ago by adeler001 • 0

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1.2k

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limma voom RNA Seq Time-course experiments

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by mahes.muniandy • 0

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935

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RNA seq wgcna

updated 4.9 years ago by Peter Langfelder ★ 3.0k • written 4.9 years ago by agustin.gonvi ▴ 20

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1.9k

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rna seq trimmomatic trimming adapter trimming paired analysis

5.0 years ago Mozart ▴ 30

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1.6k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

6.2 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Thanks Robert!

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

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Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k