Showing : RNA Seq • reset
0
votes
9
replies
624
views
How to create manhattan plot with DESeq2
deseq2 mahattan plot RNA Seq
updated 9 months ago by ▴ 130 • written 21 months ago by • 0
2
votes
5
replies
526
views
Possible batch effect correction with RNA-Seq data when the batches do not contain both biological conditions for DE analysis
batch effect limma rna seq DE
updated 15 months ago by 13k • written 15 months ago by ▴ 780
0
votes
3
replies
133
views
Normalization of RNA seq data
RNA seq cpm
updated 15 months ago by 3.2k • written 15 months ago by • 0
3
votes
3
replies
216
views
Custom gene annotations for SGSeq
sgseq alternative splicing rna seq
updated 20 months ago by ▴ 110 • written 20 months ago by • 0
1
vote
4
replies
209
views
Difference between Fold Changes from EdgeR glmLRTest and directly calculated fold changes.
edger RNA Seq
updated 20 months ago by 57k • written 20 months ago by ▴ 30
0
votes
0
replies
127
views
searching for specific RNA sequences
rna seq
20 months ago adeler001 • 0
0
votes
2
replies
194
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq SGSeq Alternative splicing
updated 21 months ago by ▴ 110 • written 21 months ago by • 0
0
votes
1
reply
156
views
51 views DESeq2 RNAseq differential expression analysis
deseq2 likelihood ratio rna seq wald test
updated 22 months ago by 33k • written 22 months ago by • 0
0
votes
2
replies
269
views
Need help cprrecting overlappinge genes on valcano plot
volcano plot rna seq
updated 23 months ago by 33k • written 23 months ago by • 0
1
vote
5
replies
418
views
Time course experiment using limma with voom
limma voom RNA Seq Time-course experiments
updated 2.1 years ago by ★ 27k • written 2.1 years ago by • 0
5
votes
3
replies
325
views
Steep dendrograms and few modules. WGCNA on RNA seq data
RNA seq wgcna
updated 2.2 years ago by ★ 2.6k • written 2.2 years ago by ▴ 10
1
vote
2
replies
436
views
adapter trimming paired vs unpaired reads
rna seq trimmomatic trimming adapter trimming paired analysis
2.2 years ago Mozart ▴ 20
0
votes
0
replies
790
views
Sub clustering from hierarchical cluster used to make heat map of gene expression data
heatmap.2 hierarchical clustering microarray RNA seq DEG
3.4 years ago lawarde.ankita1 ▴ 20
13 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Ming ▴ 350
Thx so much for the diagnosis and advice. Indeed, in my data, some genes have all 0 for all sampes of a contrast for both "Mut" and "WT" gr…
Comment: Best practice for quantifying sncRNA by Steve Lianoglou 13k
> It's my opinion that miRNA is a mirage intended to make MDs salivate and biostatisticians wail in misery, but what do I know? I'll tell …
Comment: Idea: Using DESeq2 to test a change in ratio of two genes by Michael Love 33k
Yes, it's true that we take the reference gene(s) as a noise free measurement of the reference variation with this approach, and control ag…
Answer: What lfcSE is dependent upon? by Michael Love 33k
> I tried separating out one comparison from all the system, running DESeq2 on it separately. This question is a FAQ in the vignette, tak…
Answer: P value and Adj. P value showing N/A by Michael Love 33k
This is explained in the DESeq2 vignette.
Votes
Comment: Idea: Using DESeq2 to test a change in ratio of two genes
Time Series Analysis
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels
Answer: Time series DE gene analysis with edgeR where specific timepoints have NA levels
Awards • All
Scholar to gabriel.hoffman ▴ 90
Popular Question to Thomas Maurel ▴ 790
Scholar to James W. MacDonald 57k
Teacher to Guido Hooiveld ★ 3.0k
Scholar to Michael Love 33k
Locations • All
United States, 7 minutes ago
Australia, 14 minutes ago
Denali, 15 minutes ago
San Diego, 23 minutes ago
France, 32 minutes ago
Traffic: 742 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6