Bioconductor RNA Seq

Showing : RNA Seq • reset

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4.4k

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deseq2 mahattan plot RNA Seq

updated 5.3 years ago by bernatgel ▴ 150 • written 6.3 years ago by adeler001 • 0

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5.6k

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batch effect limma rna seq DE

updated 5.8 years ago by Steve Lianoglou ★ 13k • written 5.8 years ago by svlachavas ▴ 840

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1.6k

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RNA seq cpm

updated 5.8 years ago by Kevin Blighe ★ 4.0k • written 5.8 years ago by isabel.pieterse • 0

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1.6k

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sgseq alternative splicing rna seq

updated 18 months ago by Sara • 0 • written 6.2 years ago by 116100016 • 0

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1.4k

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edger RNA Seq

updated 6.2 years ago by James W. MacDonald 68k • written 6.2 years ago by abf ▴ 30

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861

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rna seq

6.2 years ago adeler001 • 0

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1.5k

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rna seq SGSeq Alternative splicing

updated 6.3 years ago by Leonard Goldstein ▴ 260 • written 6.3 years ago by 116100016 • 0

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882

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deseq2 likelihood ratio rna seq wald test

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by adeler001 • 0

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1.6k

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volcano plot rna seq

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by adeler001 • 0

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2.0k

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limma voom RNA Seq Time-course experiments

updated 6.6 years ago by Aaron Lun ★ 29k • written 6.7 years ago by mahes.muniandy • 0

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1.8k

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RNA seq wgcna

updated 6.7 years ago by Peter Langfelder ★ 3.0k • written 6.7 years ago by agustin.gonvi ▴ 20

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2.9k

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rna seq trimmomatic trimming adapter trimming paired analysis

6.8 years ago Mozart ▴ 30

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2.3k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

8.0 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Answer: Bulk RNAseq analysis for by Gordon Smyth 53k

All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…

Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo by a2a2haa • 0

By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…

Answer: Bulk RNAseq analysis for by James W. MacDonald 68k

In my experience, the within-clone variability of differentiated stem cells is often as large or larger than the between-clone variability,…

Comment: Jobs at Ensembl by frostybuddyy • 0

I found your blog "Jobs at Ensembl" quite fascinating! The way you talked about the convergence of bioinformatics and data science in emplo…

Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

Votes

Comment: Are transformed values from rlog /vst log2 normalized counts?

Are transformed values from rlog /vst log2 normalized counts?

Answer: Bulk RNAseq analysis for

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

Awards • All

Popular Question to Andreas Zankl ▴ 80

Popular Question to Guido Hooiveld ★ 4.1k