Bioconductor Seqinr

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1.5k

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fastq fast seqinr

updated 3.7 years ago by ATpoint ★ 5.0k • written 3.7 years ago by hank00000 • 0

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1.6k

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R seqinr biostrings

7.3 years ago rabalski • 0

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seqinr

updated 7.3 years ago by Martin Morgan 25k • written 7.3 years ago by daviqd.halvorsen • 0

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1.4k

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rmysql fastq seqinr ngs sangerseqr

7.6 years ago JoeMG • 0

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5.7k

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multiple sequences bioconductor rstudio seqinr

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by Riot • 0

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1.5k

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shuffle regioner seqinr

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by Dimitris Polychronopoulos ▴ 80

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3.9k

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seqinr choose bank error message

updated 9.7 years ago by Martin Morgan 25k • written 9.7 years ago by jayanthisahithi ▴ 10

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4.5k

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seqinr fasta

updated 10.3 years ago by Hervé Pagès 16k • written 10.3 years ago by Angel ▴ 40

8 results • Page 1 of 1

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Answer: Important: Bioconductor Release 3.22 Delayed by Jasonalker09A • 0

Thanks for @[msn games][1] the update. Connectivity issues can definitely cause a cascade of errors, so delaying the release is completely …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to James W. MacDonald 68k