Bioconductor Seqinr

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1.2k

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fastq fast seqinr

updated 2.7 years ago by ATpoint ★ 4.6k • written 2.7 years ago by hank00000 • 0

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1.3k

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R seqinr biostrings

6.3 years ago rabalski • 0

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887

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seqinr

updated 6.4 years ago by Martin Morgan 25k • written 6.4 years ago by daviqd.halvorsen • 0

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1.1k

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rmysql fastq seqinr ngs sangerseqr

6.6 years ago JoeMG • 0

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5.0k

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multiple sequences bioconductor rstudio seqinr

updated 7.9 years ago by Martin Morgan 25k • written 7.9 years ago by Riot • 0

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1.3k

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shuffle regioner seqinr

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by Dimitris Polychronopoulos ▴ 80

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3.5k

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seqinr choose bank error message

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by jayanthisahithi ▴ 10

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4.1k

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seqinr fasta

updated 9.3 years ago by Hervé Pagès 16k • written 9.3 years ago by Angel ▴ 40

8 results • Page 1 of 1

Recent ...

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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