Bioconductor Seqinr

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1.3k

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fastq fast seqinr

updated 2.9 years ago by ATpoint ★ 4.7k • written 2.9 years ago by hank00000 • 0

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1.4k

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R seqinr biostrings

6.5 years ago rabalski • 0

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927

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seqinr

updated 6.6 years ago by Martin Morgan 25k • written 6.6 years ago by daviqd.halvorsen • 0

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1.2k

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rmysql fastq seqinr ngs sangerseqr

6.9 years ago JoeMG • 0

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5.3k

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multiple sequences bioconductor rstudio seqinr

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by Riot • 0

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1.4k

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shuffle regioner seqinr

updated 8.3 years ago by Martin Morgan 25k • written 8.3 years ago by Dimitris Polychronopoulos ▴ 80

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3.6k

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seqinr choose bank error message

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by jayanthisahithi ▴ 10

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4.2k

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seqinr fasta

updated 9.5 years ago by Hervé Pagès 16k • written 9.6 years ago by Angel ▴ 40

8 results • Page 1 of 1

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Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Thank you so much!! Yeah I had thought about this too, regarding the fact that DiffBind is a wrapper for counting peaks in this way in R di…

Comment: DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling) by aitor • 0

Hi everyone. I have a RIP-Seq analysis with 3 conditions and 3 assays (IP, IgG and Input for each of them). 4 replicates for each conditio…

Comment: Discrepancy between Excel TPP-TR reported values and the Melt Curve reported val by James W. MacDonald 68k

You will need to provide a self-contained example, or it is unlikely that anybody could debug any possible issue.

Answer: Limma - Complex 2-way multi-level contrast with paired samples by James W. MacDonald 68k

If you are fitting donor as a fixed effect you do not also need to fit as a random effect. The limma package fits a generalized least squar…

Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by ATpoint ★ 4.7k

Yes, perfectly valid. Analyzing counts from high-throughput experiments with DESeq2 (or edgeR, or limma) is standard. After all, what DiffB…

Votes

Answer: Limma - Complex 2-way multi-level contrast with paired samples

Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks

Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression

Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf

Answer: Differential expression of proteins using somascan data

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