Bioconductor Sequence

Showing : sequence • reset

votes

950

views

conservation sequence genomicalignments

6.4 years ago martin.busch • 0

votes

replies

1.9k

views

sequence bsgenome

updated 7.4 years ago by Martin Morgan 25k • written 7.4 years ago by nicola.romano ▴ 10

votes

replies

2.5k

views

R Biostrings sequence

updated 7.7 years ago by Mike Smith ★ 6.6k • written 7.7 years ago by aspenaure • 0

votes

replies

1.6k

views

biostrings iranges sequence alignment protein

updated 7.9 years ago by Michael Lawrence ★ 11k • written 7.9 years ago by Assa Yeroslaviz ★ 1.5k

votes

2.2k

views

sequence annotationhub biostrings

updated 9.4 years ago by Hervé Pagès 16k • written 9.4 years ago by antje.janosch • 0

votes

1.5k

views

ABI sequence DNA melting curve

updated 9.5 years ago by Hervé Pagès 16k • written 9.5 years ago by Prasanth ▴ 20

votes

replies

1.8k

views

sequence alignment biostrings

updated 10.0 years ago by Hervé Pagès 16k • written 10.0 years ago by ben.ward ▴ 30

votes

replies

2.0k

views

ab1 sequence sangerseqR

updated 10.0 years ago by aaron.l.statham ▴ 10 • written 10.0 years ago by anuragm • 0

8 results • Page 1 of 1

Recent ...

Replies

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by yinhjk602 • 0

https://sprunkiphase4.net/ Sprunki Phase 4 is the latest update in the music rhythm game, offering new beats, characters, and challenges. Y…

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

Awards • All