Bioconductor Sequence

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934

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conservation sequence genomicalignments

6.2 years ago martin.busch • 0

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1.9k

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sequence bsgenome

updated 7.3 years ago by Martin Morgan 25k • written 7.3 years ago by nicola.romano ▴ 10

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2.4k

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R Biostrings sequence

updated 7.6 years ago by Mike Smith ★ 6.6k • written 7.6 years ago by aspenaure • 0

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1.5k

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biostrings iranges sequence alignment protein

updated 7.8 years ago by Michael Lawrence ★ 11k • written 7.8 years ago by Assa Yeroslaviz ★ 1.5k

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2.1k

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sequence annotationhub biostrings

updated 9.2 years ago by Hervé Pagès 16k • written 9.2 years ago by antje.janosch • 0

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1.5k

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ABI sequence DNA melting curve

updated 9.4 years ago by Hervé Pagès 16k • written 9.4 years ago by Prasanth ▴ 20

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1.8k

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sequence alignment biostrings

updated 9.9 years ago by Hervé Pagès 16k • written 9.9 years ago by ben.ward ▴ 30

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1.9k

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ab1 sequence sangerseqR

updated 9.9 years ago by aaron.l.statham ▴ 10 • written 9.9 years ago by anuragm • 0

8 results • Page 1 of 1

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Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k

`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample.

Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0

Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…

Answer: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k

Given nf-core's pipeline here, you can use rounded counts from `gene_counts_length_scaled.tsv`.

Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Thank you very much for your very detailed explanation! I guess my question is simpler than that, I just want to union, across…

Votes

Answer: DESeq Input from Salmon + tximport/tximeta

Answer: featureCounts segmentation fault with large chromosomes

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu

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