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sgseq
•
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0
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0
replies
93
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how to do Differential splicing from SGSeq analysis
DEXSeq
SGSeq
15 days ago • updated 11 days ago
Sara
• 0
0
votes
1
reply
149
views
The issue with SGSeq_analyzeFeatures() returns errors on BAM files
SGSeq
updated 24 days ago by
kamryncole1963
• 0 • written 28 days ago by
Sara
• 0
0
votes
0
replies
170
views
Could SGSeq utilizes "ts" tag produced from minimap2 other than "XS" tag?
XS-tag
SplicedAlignment
SGSeq
minimap2
9 weeks ago
jk
• 0
0
votes
0
replies
261
views
SGSeq how export PSI values for each typr of splice variant
SGSeq
6 months ago
Alison
• 0
2
votes
4
replies
1.2k
views
How should I handle read counts derived from SGSeq when they were passed to limma/edgeR
SGSeq
limma
edgeR
updated 3.6 years ago by
Leonard Goldstein
▴ 200 • written 3.6 years ago by
zliu
▴ 10
0
votes
1
reply
721
views
Extract sample information from own BAM files using SGSeq
SGSeq
updated 4.4 years ago by
Leonard Goldstein
▴ 200 • written 4.4 years ago by
anjanhazra
• 0
3
votes
3
replies
888
views
Custom gene annotations for SGSeq
sgseq
alternative splicing
rna seq
updated 4.5 years ago by
Leonard Goldstein
▴ 200 • written 4.5 years ago by
116100016
• 0
0
votes
2
replies
782
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq
SGSeq
Alternative splicing
updated 4.6 years ago by
Leonard Goldstein
▴ 200 • written 4.6 years ago by
116100016
• 0
0
votes
0
replies
854
views
How to run my own data using SGSeq?
annotation
sgseq
updated 5.3 years ago by
shepherl
3.9k • written 5.3 years ago by
huizeng
• 0
0
votes
6
replies
1.5k
views
Which sequencing parameters are required for SGSeq analysis of splice events?
rna-seq
alternative splicing
SGSeq
5.5 years ago
andrea.bast
• 0
0
votes
1
reply
924
views
SGFeatureCounts function in SGSeq package failed to generate splice graphs
sgseq
updated 6.5 years ago by
Leonard Goldstein
▴ 200 • written 6.5 years ago by
mgdrnl
• 0
1
vote
1
reply
1.6k
views
SGSeq error on getBamInfo
SGSeq
getBamInfo
RNASeq
updated 6.6 years ago by
Leonard Goldstein
▴ 200 • written 6.6 years ago by
oolongoni
▴ 10
4
votes
5
replies
1.6k
views
R session crash with SGSeq::convertToTxFeatures
crash
SGSeq
TxDb
makeTxDbFromBiomart
TxFeatures
updated 6.6 years ago by
Leonard Goldstein
▴ 200 • written 6.6 years ago by
oolongoni
▴ 10
8
votes
7
replies
1.8k
views
SGSeq: moving toward diffex from SGSeq analysis
sgseq
rnaseq
updated 4 days ago by
Sara
• 0 • written 6.7 years ago by
Sylvain Foisy
▴ 80
0
votes
3
replies
1.1k
views
question about subsetting SGSeq results by different categories of splice events
sgseq
updated 6.9 years ago by
Leonard Goldstein
▴ 200 • written 6.9 years ago by
amanda.joy.price
• 0
0
votes
5
replies
1.6k
views
Error when running getSGFeatureCounts
SGSeq
software error
updated 7.3 years ago by
Leonard Goldstein
▴ 200 • written 7.3 years ago by
jpromero
• 0
0
votes
15
replies
2.1k
views
Issues with SGSeq: analyzeVariants method returns an error...
sgseq
analyzevariants
updated 7.4 years ago by
Leonard Goldstein
▴ 200 • written 7.6 years ago by
Sylvain Foisy
▴ 80
1
vote
15
replies
3.2k
views
Issues with SGSeq: plotFeatures method returns NULL
sgseq
updated 7.6 years ago by
Leonard Goldstein
▴ 200 • written 7.8 years ago by
Sylvain Foisy
▴ 80
5
votes
8
replies
3.1k
views
Issues with SGSeq: analyzeFeatures() returns errors on BAM files
sgseq
updated 4.4 years ago by
anjanhazra
• 0 • written 7.8 years ago by
Sylvain Foisy
▴ 80
5
votes
16
replies
2.7k
views
Read counts generated by SGSeq are always 0
sgseq
splicing
alternative splicing
updated 8.2 years ago by
Leonard Goldstein
▴ 200 • written 8.2 years ago by
vakul.mohanty
▴ 20
2
votes
2
replies
1.6k
views
SGSeq: class of "sample_info" argument of analyzeFeatures, data.frame or DataFrame!
sgseq
updated 8.2 years ago by
Leonard Goldstein
▴ 200 • written 8.2 years ago by
Chao-Jen Wong
▴ 40
1
vote
6
replies
1.9k
views
Error when predicting features with SGSeq
SGSeq
updated 8.8 years ago by
Leonard Goldstein
▴ 80 • written 8.8 years ago by
Helen Zhou
▴ 150
1
vote
6
replies
2.2k
views
SGSeq error on analyzeFeatures
SGSeq
analyzeFeatures
Splicing
9.4 years ago
Paolo Guarnieri
▴ 20
23 results • Page
1 of 1
Recent ...
Replies
Answer: Differential gene expression analysis results
by
ATpoint
★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results
by
swbarnes2
★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Dylan.Sheerin
• 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Gordon Smyth
50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
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