Showing : simpleaffy • reset
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Simpleaffy Error: the following are not valid files
simpleaffy simpleaffy
17.6 years ago Boel Brynedal ▴ 200
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3
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1.4k
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minimum expression level (Simpleaffy)
Normalization simpleaffy Normalization simpleaffy
updated 17.8 years ago by ▴ 310 • written 17.8 years ago by ▴ 90
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simpleaffy
Microarray Normalization simpleaffy Microarray Normalization simpleaffy
updated 17.8 years ago by ▴ 220 • written 17.8 years ago by ▴ 90
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AffyExpress: AffyQA incompatible with simpleaffy 2.14.04?
cdf simpleaffy AffyExpress cdf simpleaffy AffyExpress
18.1 years ago Stefan Thomsen ▴ 50
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simpleaffy 2.14.02, setQCEnvironment
cdf simpleaffy ASSIGN cdf simpleaffy ASSIGN
updated 18.1 years ago by ★ 1.1k • written 18.1 years ago by ▴ 50
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4
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1.7k
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problems rma() with mouse exon affy data in exonmap package
Survival cdf genefilter affy simpleaffy plier exonmap Survival cdf genefilter affy
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 20
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5
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affyPLM - cant plot chip pseudo image
cdf genefilter affy affydata affyPLM simpleaffy affyio cdf genefilter affy affydata
updated 18.3 years ago by 68k • written 18.3 years ago by ▴ 50
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Return of "I'm sorry, I do not know about chip type (foo)"
Survival cdf affydata limma gcrma matchprobes affyPLM simpleaffy Survival cdf affydata
18.3 years ago Dave Jacoby ▴ 20
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Bioconductor web page
GO Cancer tkWidgets reposTools widgetTools simpleaffy affyQCReport affyio GO Cancer
18.4 years ago Seth Falcon ★ 7.4k
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problem with function rma
Normalization rat2302 cdf genefilter affy simpleaffy affyQCReport affyio Normalization
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ▴ 80
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6
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ReadAffy Error: new versions causing problems?
genefilter gcrma matchprobes simpleaffy affyio genefilter gcrma matchprobes simpleaffy
updated 18.5 years ago by ▴ 20 • written 18.5 years ago by ▴ 200
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simpleaffy problem - drosophila2
drosophila2 cdf affy affydata simpleaffy drosophila2 cdf affy affydata simpleaffy
18.5 years ago Yihuan Xu ▴ 130
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9
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2.5k
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problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ★ 2.2k
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1
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simpleaffy plot error
Survival cdf genefilter simpleaffy Survival cdf genefilter simpleaffy
updated 18.5 years ago by ★ 1.1k • written 18.5 years ago by ▴ 510
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RMA warning message about missing se.exprs
Survival Cancer cdf genefilter simpleaffy Survival Cancer cdf genefilter simpleaffy
updated 18.5 years ago by 25k • written 18.5 years ago by ▴ 110
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affy package: accessing the mas5 scale factors
affy simpleaffy PROcess affy simpleaffy PROcess
18.5 years ago Fenglong Liu ▴ 10
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1
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824
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qc and plasmodium anopheles chips
simpleaffy simpleaffy
updated 18.6 years ago by 68k • written 18.6 years ago by ▴ 510
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709
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time series analysis
simpleaffy simpleaffy
18.7 years ago David Ruau ▴ 190
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1.4k
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AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf genefilter affy simpleaffy affyQCReport cdf genefilter affy simpleaffy affyQCReport
updated 18.7 years ago by ★ 1.1k • written 18.8 years ago by ▴ 270
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AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf probe genefilter affy simpleaffy affyQCReport cdf probe genefilter affy simpleaffy
18.8 years ago Wu, Xiwei ▴ 350
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4
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1.8k
views
error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 18.8 years ago by ★ 13k • written 18.8 years ago by ▴ 830
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annaffy errors
GO Survival mgu74av2 cdf annotate affy limma gcrma matchprobes annaffy simpleaffy plier
updated 18.8 years ago by 68k • written 18.8 years ago by ▴ 320
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using simpleaffy incorrectly, or is there a problem with the read.affy function?
Microarray Survival Cancer genefilter affy simpleaffy affyio Microarray Survival Cancer
18.8 years ago k. brand ▴ 420
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2
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1.6k
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simpleaffy and yeast2cdf problems
Survival cdf genefilter affy simpleaffy Survival cdf genefilter affy simpleaffy
updated 18.8 years ago by ▴ 160 • written 18.8 years ago by ▴ 50
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problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 18.9 years ago by 68k • written 18.9 years ago by ▴ 890
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ReadAffy can not find function read.AnnotatedDataFrame
Biobase genefilter affydata limma simpleaffy hopach affyio Biobase genefilter affydata
updated 18.9 years ago by 68k • written 18.9 years ago by ▴ 510
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2
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Error in function (classes, fdef, mtable)
cdf genefilter reposTools gcrma matchprobes affyPLM simpleaffy affyio cdf genefilter
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 360
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Bioconductor Digest, Vol 45, Issue 9
affy simpleaffy affyio affy simpleaffy affyio
19.0 years ago Dick Beyer ★ 1.4k
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simpleaffy gives error: unable to find an inherited method for function "pData"
affy simpleaffy affyio affy simpleaffy affyio
19.0 years ago Dick Beyer ★ 1.4k
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813
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Checking qc
Genetics simpleaffy Genetics simpleaffy
19.1 years ago alex lam RI ▴ 310
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1.1k
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qc
Survival Biobase genefilter affy affydata affyPLM simpleaffy affyio Survival Biobase
updated 19.2 years ago by 68k • written 19.2 years ago by ▴ 10
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[R] problem loading affycoretools - solved!
Biobase Ruuid genefilter multtest graph limma gcrma matchprobes affyPLM RBGL simpleaffy
updated 19.2 years ago by ★ 7.4k • written 19.2 years ago by ★ 2.2k
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error in simpleaffy qc: I'm sorry, I do not know about chip type: poplarcdf
Survival cdf genefilter affy simpleaffy Survival cdf genefilter affy simpleaffy
19.3 years ago Levi Waldron ▴ 30
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1
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1.3k
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qc function missing in Linux version of simpleaffy
cdf genefilter affy affydata simpleaffy affyQCReport affyio cdf genefilter affy affydata
updated 19.3 years ago by 68k • written 19.3 years ago by ▴ 160
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Why mm's changing after bg.adjust.gcrma?
drosgenome1 cdf Biobase reposTools affy gcrma affyPLM simpleaffy affyQCReport affyio cdf
19.5 years ago Jenny Drnevich ★ 2.2k
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simpleAffy, custom chip error
GO cdf probe gcrma simpleaffy affyQCReport GO cdf probe gcrma simpleaffy affyQCReport
19.5 years ago Wittner, Ben ▴ 290
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Obtaining values like those from .exp files
Microarray affy simpleaffy Microarray affy simpleaffy
19.7 years ago Ruppert Valentino ▴ 270
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Scaling Factor for Affymetrix chips
affy gcrma simpleaffy affy gcrma simpleaffy
19.7 years ago Jacky Pallas ▴ 10
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Differences: mas5/mas5calls vs. call.expr/pairwise.comparison
affy simpleaffy affy simpleaffy
19.7 years ago Benjamin Otto ▴ 830
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Simpleaffy pairwise.comparison uses a correction for multiple test?
simpleaffy simpleaffy
19.8 years ago Giulio Di Giovanni ▴ 540
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problem with loading affyQCReport
simpleaffy affyQCReport simpleaffy affyQCReport
updated 19.9 years ago by ★ 7.4k • written 19.9 years ago by ▴ 10
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2
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1.3k
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SimpleAffy: problem with Yeast Genome 2.0 Array
Yeast cdf simpleaffy Yeast cdf simpleaffy
updated 20.0 years ago by ★ 2.2k • written 20.0 years ago by ▴ 170
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1.2k
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affy and simpleaffy error
probe affy simpleaffy probe affy simpleaffy
20.2 years ago Narendra Kaushik ▴ 150
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2
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1.5k
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zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 20.3 years ago by ▴ 780 • written 20.3 years ago by ★ 1.4k
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1.5k
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zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 20.3 years ago by ★ 1.4k • written 20.3 years ago by ★ 1.1k
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Error in qc.affy(unnormalised, ...) : I'm sorry, I, do not know about chip type: moe430acdf
limma gcrma matchprobes simpleaffy limma gcrma matchprobes simpleaffy
20.3 years ago Dan Frampton ▴ 10
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error with results.summary in simpleaffy
Annotation Cancer hgu133a probe simpleaffy Annotation Cancer hgu133a probe simpleaffy
updated 20.3 years ago by ▴ 160 • written 20.4 years ago by ★ 1.1k
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justMAS for macs in simpleaffy package
simpleaffy simpleaffy
20.3 years ago Eitan Halper-Stromberg ▴ 30
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1.4k
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Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
updated 20.3 years ago by ★ 1.4k • written 20.3 years ago by ★ 1.1k
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Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
20.3 years ago Dick Beyer ★ 1.4k
134 results • Page 2 of 3
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Comment: After running samtools, the featureCounts command crashed. by eja.gssssse.r.m • 0
The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …
Comment: gene Set with high AUC score but no cells assigned to cell type by eja.gssssse.r.m • 0
It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …
Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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