Showing : simplesinglecell • reset
4
votes
5
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2.9k
views
emptyDrops identified less non-empty cells with lower total UMI counts?
DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling
updated 5.0 years ago by ★ 29k • written 6.2 years ago by ▴ 140
4
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6
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1.8k
views
Feature selection across batches in simpleSingleCell when spike-ins are not available.
simpleSingleCell
updated 6.2 years ago by ★ 29k • written 6.2 years ago by • 0
1
vote
1
reply
1.0k
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Feature selection across batches in simpleSingleCell "Correcting batch effects" vignette
simpleSingleCell
updated 6.2 years ago by ★ 29k • written 6.2 years ago by • 0
5
votes
1
reply
5.5k
views
Error with DropletUtils::EmptyDrops()
DropletUtils EmptyDrops simpleSingleCell
updated 3.2 years ago by ▴ 40 • written 6.3 years ago by ▴ 20
1
vote
5
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2.3k
views
Preprocessing in scran::doubletCells
scran simpleSingleCell
updated 6.3 years ago by ★ 29k • written 6.3 years ago by • 0
4
votes
4
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3.6k
views
using limma and edgeR for differential expression of Drop-seq/10xGenomics scRNA-seq data
limma edgeR simplesingleCell scran scater
updated 6.3 years ago by ★ 29k • written 6.3 years ago by ▴ 670
4
votes
2
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2.3k
views
single cell data: adding random effects for subject with multilevel experiment design
SingleCellExperiment scran limma simpleSingleCell
updated 6.4 years ago by ★ 29k • written 6.4 years ago by • 0
1
vote
3
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2.2k
views
Troubles with barcodeRanks()
DropletUtils SingleCellExperiement DelayedArray simpleSingleCell
updated 6.4 years ago by ★ 29k • written 6.4 years ago by ▴ 170
8
votes
2
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3.6k
views
Recommendations for combining multiple 10x runs into one SingleCellExperiment
singlecellexperiment dropletutils simplesinglecell
updated 7.1 years ago by ★ 29k • written 7.1 years ago by ▴ 760
0
votes
1
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1.3k
views
Unusual graph for Identifying HVGs from the normalized log-expression
workflows simplesinglecell
updated 7.1 years ago by ★ 29k • written 7.1 years ago by • 0
0
votes
1
reply
1.3k
views
The explanation of plotExplanatoryVariables plot
simplesinglecell
updated 7.6 years ago by ★ 29k • written 7.6 years ago by • 0
1
vote
2
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2.3k
views
SingleCellExperiment object cannot be used by Scater package?
scater singlecellexperiment simplesinglecell
updated 7.7 years ago by ★ 29k • written 7.7 years ago by • 0
3
votes
2
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4.2k
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Sparse matrices in Bioconductor objects for single-cell analyses
scater simpleSingleCell workflows
updated 8.4 years ago by ★ 29k • written 8.4 years ago by ▴ 70
13 results • Page 1 of 1
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Comment: Failure to download resources (MeSHDb) from AnnotationHub by Steve Lianoglou ★ 13k
That fixed it, thanks Lori!
Comment: Suppress warning in RHDF5 write by nicolas.lhuillier • 0
Thanks a lot for the quick and effective reply. I had tried "suppressWarnings" but not "suppressMessages".
Answer: Suppress warning in RHDF5 write by James W. MacDonald 68k
``` > fun <- function() message("this is a message") > fun() this is a message > suppressMessages(fun()) > ```
Answer: Failure to download resources (MeSHDb) from AnnotationHub by shepherl 4.2k
apologies. These are contributed by someone outside the core team. On upload I did not realize they included the older Bioconductor storage…
Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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