Bioconductor Simplesinglecell

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2.5k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.4 years ago by Aaron Lun ★ 28k • written 5.6 years ago by C T ▴ 140

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1.6k

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simpleSingleCell

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Angelos Armen • 0

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889

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simpleSingleCell

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Angelos Armen • 0

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5.2k

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DropletUtils EmptyDrops simpleSingleCell

updated 2.6 years ago by Stefano Mangiola ▴ 40 • written 5.6 years ago by shbrief ▴ 20

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2.1k

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scran simpleSingleCell

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Angelos Armen • 0

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3.3k

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limma edgeR simplesingleCell scran scater

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Bogdan ▴ 670

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2.1k

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SingleCellExperiment scran limma simpleSingleCell

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Matt Mulé • 0

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2.0k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Steve Pederson ▴ 170

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3.2k

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singlecellexperiment dropletutils simplesinglecell

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by Peter Hickey ▴ 750

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1.1k

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workflows simplesinglecell

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by es.azadian • 0

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1.1k

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simplesinglecell

updated 7.0 years ago by Aaron Lun ★ 28k • written 7.0 years ago by Xingyu • 0

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2.1k

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scater singlecellexperiment simplesinglecell

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by Xingyu • 0

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3.8k

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scater simpleSingleCell workflows

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by sandmann.t ▴ 70

13 results • Page 1 of 1

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Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20

I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…

Answer: Error in cnetplot by Guido Hooiveld ★ 4.1k

Unfortunately you did not show how you generated your input data (the object `enrichment`), nor did you show the output from `sessionInfo()…

Answer: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

I think this is because Ensembl can assign different Gene IDs to "the same gene" if it is found both on a standard chromosome and a scaffol…

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Answer: Merging annotation with differential expression output

Answer: Explannation for ROAST results

Comment: Limma comparing gene expression between base line and one treatment

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

clusterProfiler-GO enrichment Error

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