Bioconductor Simplesinglecell

Showing : simplesinglecell • reset

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2.9k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 5.0 years ago by Aaron Lun ★ 29k • written 6.2 years ago by C T ▴ 140

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1.8k

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simpleSingleCell

updated 6.2 years ago by Aaron Lun ★ 29k • written 6.2 years ago by Angelos Armen • 0

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1.0k

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simpleSingleCell

updated 6.2 years ago by Aaron Lun ★ 29k • written 6.2 years ago by Angelos Armen • 0

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5.5k

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DropletUtils EmptyDrops simpleSingleCell

updated 3.2 years ago by Stefano Mangiola ▴ 40 • written 6.3 years ago by shbrief ▴ 20

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2.3k

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scran simpleSingleCell

updated 6.3 years ago by Aaron Lun ★ 29k • written 6.3 years ago by Angelos Armen • 0

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3.6k

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limma edgeR simplesingleCell scran scater

updated 6.3 years ago by Aaron Lun ★ 29k • written 6.3 years ago by Bogdan ▴ 670

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2.3k

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SingleCellExperiment scran limma simpleSingleCell

updated 6.4 years ago by Aaron Lun ★ 29k • written 6.4 years ago by Matt Mulé • 0

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2.2k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 6.4 years ago by Aaron Lun ★ 29k • written 6.4 years ago by Steve Pederson ▴ 170

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3.6k

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singlecellexperiment dropletutils simplesinglecell

updated 7.1 years ago by Aaron Lun ★ 29k • written 7.1 years ago by Peter Hickey ▴ 760

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1.3k

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workflows simplesinglecell

updated 7.1 years ago by Aaron Lun ★ 29k • written 7.1 years ago by es.azadian • 0

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1.3k

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simplesinglecell

updated 7.6 years ago by Aaron Lun ★ 29k • written 7.6 years ago by Xingyu • 0

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2.3k

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scater singlecellexperiment simplesinglecell

updated 7.7 years ago by Aaron Lun ★ 29k • written 7.7 years ago by Xingyu • 0

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4.2k

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scater simpleSingleCell workflows

updated 8.4 years ago by Aaron Lun ★ 29k • written 8.4 years ago by sandmann.t ▴ 70

13 results • Page 1 of 1

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Comment: Questions about pseudo counts from RUVSeq by tommyl asagas • 0

For RNA Seq data analysis, ensuring accurate normalization and batch correction is crucial, just like using a reliable messaging app ensure…

Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k

I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…

Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k

If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Awards • All

Popular Question to edward.esiribloom • 0

Popular Question to Fred Hutch (Recruiting) ▴ 40