Bioconductor Simplesinglecell

Showing : simplesinglecell • reset

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2.3k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.1 years ago by Aaron Lun ★ 28k • written 5.2 years ago by C T ▴ 140

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1.4k

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simpleSingleCell

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by Angelos Armen • 0

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819

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simpleSingleCell

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by Angelos Armen • 0

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4.9k

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DropletUtils EmptyDrops simpleSingleCell

updated 2.3 years ago by Stefano Mangiola ▴ 20 • written 5.3 years ago by shbrief ▴ 20

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1.9k

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scran simpleSingleCell

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by Angelos Armen • 0

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3.1k

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limma edgeR simplesingleCell scran scater

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by Bogdan ▴ 670

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1.9k

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SingleCellExperiment scran limma simpleSingleCell

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by Matt Mulé • 0

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1.9k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by Steve Pederson ▴ 170

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2.8k

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singlecellexperiment dropletutils simplesinglecell

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by Peter Hickey ▴ 740

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1.0k

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workflows simplesinglecell

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by es.azadian • 0

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1.1k

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simplesinglecell

updated 6.7 years ago by Aaron Lun ★ 28k • written 6.7 years ago by Xingyu • 0

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scater singlecellexperiment simplesinglecell

updated 6.8 years ago by Aaron Lun ★ 28k • written 6.8 years ago by Xingyu • 0

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3.5k

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scater simpleSingleCell workflows

updated 7.4 years ago by Aaron Lun ★ 28k • written 7.4 years ago by sandmann.t ▴ 70

13 results • Page 1 of 1

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Answer: UniProt.ws query loading indefinitely by James W. MacDonald 67k

It should be almost instantaneous. Do you have internet access on the local computer? ``` > system.time(up <- UniProt.ws()) user s…

Comment: Package needs internet access by James W. MacDonald 67k

I am not sure what you mean by 'only used to create that genome file'. What's happening is you are converting the `seqlevels` of an existin…

Comment: Identifying potentially associated gene set to drug response using GSVA by wtao7767 • 0

https://sprunki.net/ Incredibox Sprunki is a creative mod of the classic Incredibox game, blending Sprunki's unique style with interactive …

Answer: Allele frequencies for ALL alleles of one SNP ? by Abiologist • 0

I've discovered that rsnps::ncbi_snp_query(snp_id) does actually give this information - at the bottom of the result$maf_population table. …

Answer: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k

Hi, if you want to do some formal inference about the effect of a drug at RNA level, then I would recommend you doing a differential expres…

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Answer: Package needs internet access

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

Comment: Harmonizing Gene Annotations for Meta-Analysis of GSE68183 and GSE80178

Dotplot from enricher outputting very few genes

Awards • All

Scholar to James W. MacDonald 67k