Biostar SimplesingleCell

Showing : simplesingleCell • reset

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1.2k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 2.3 years ago by Aaron Lun ★ 28k • written 3.4 years ago by C T ▴ 140

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723

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simpleSingleCell

updated 3.4 years ago by Aaron Lun ★ 28k • written 3.4 years ago by Angelos Armen • 0

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377

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simpleSingleCell

updated 3.4 years ago by Aaron Lun ★ 28k • written 3.4 years ago by Angelos Armen • 0

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3.3k

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DropletUtils EmptyDrops simpleSingleCell

updated 5 months ago by stefano.mangiola ▴ 10 • written 3.5 years ago by shbrief ▴ 20

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1.0k

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scran simpleSingleCell

updated 3.5 years ago by Aaron Lun ★ 28k • written 3.5 years ago by Angelos Armen • 0

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1.9k

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limma edgeR simplesingleCell scran scater

updated 3.5 years ago by Aaron Lun ★ 28k • written 3.5 years ago by Bogdan ▴ 660

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912

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SingleCellExperiment scran limma simpleSingleCell

updated 3.6 years ago by Aaron Lun ★ 28k • written 3.6 years ago by Matt Mulé • 0

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1.1k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 3.7 years ago by Aaron Lun ★ 28k • written 3.7 years ago by Steve Pederson ▴ 170

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1.6k

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singlecellexperiment dropletutils simplesinglecell

updated 4.3 years ago by Aaron Lun ★ 28k • written 4.3 years ago by Peter Hickey ▴ 630

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565

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workflows simplesinglecell

updated 4.4 years ago by Aaron Lun ★ 28k • written 4.4 years ago by es.azadian • 0

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696

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simplesinglecell

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by Xingyu • 0

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1.3k

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scater singlecellexperiment simplesinglecell

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by Xingyu • 0

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2.5k

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scater simpleSingleCell workflows

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by sandmann.t ▴ 70

13 results • Page 1 of 1

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Comment: Empty ChipQC Report by Okan • 0

Hi, I have the same issue. Have you found any solution or any reason why this is happening?

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

Am I understanding correctly that you have 24 RNA-seq libraries in total, 6 from the pooled samples and 18 from regular samples with biolog…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

I'm sorry, I know it is kinda confusing... We have 6 pools in total: Phenotype A: T1a, T2, T1b, T1c Phenotype B: T1, T2 Each pool consist…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

Sorry, I don't understand your experiment. You are reading the edgeR Section on on what to do without replicates, but your experiment appe…

Answer: MA plot by Nathalie • 0

Thank you very much for your help and comments. There is errors in my file. BaseMean is BaseMeanLog2. I don't know how insert a file.

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Volcano Plot in R

Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.

Answer: MA plot

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