Bioconductor SimplesingleCell

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.4 years ago by Aaron Lun ★ 28k • written 5.6 years ago by C T ▴ 140

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1.6k

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simpleSingleCell

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Angelos Armen • 0

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889

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simpleSingleCell

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Angelos Armen • 0

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5.2k

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DropletUtils EmptyDrops simpleSingleCell

updated 2.6 years ago by Stefano Mangiola ▴ 40 • written 5.6 years ago by shbrief ▴ 20

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2.1k

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scran simpleSingleCell

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Angelos Armen • 0

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3.3k

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limma edgeR simplesingleCell scran scater

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Bogdan ▴ 670

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2.1k

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SingleCellExperiment scran limma simpleSingleCell

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Matt Mulé • 0

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2.0k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Steve Pederson ▴ 170

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3.2k

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singlecellexperiment dropletutils simplesinglecell

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by Peter Hickey ▴ 750

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1.1k

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workflows simplesinglecell

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by es.azadian • 0

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1.1k

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simplesinglecell

updated 7.0 years ago by Aaron Lun ★ 28k • written 7.0 years ago by Xingyu • 0

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2.1k

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scater singlecellexperiment simplesinglecell

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by Xingyu • 0

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3.8k

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scater simpleSingleCell workflows

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by sandmann.t ▴ 70

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Comment: Package developing and interoperation with Bioconductor by shepherl 4.1k

Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …

Comment: Validity of SingleR with very small bulk RNAseq reference by Rohit • 0

Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge

Comment: CpGs with genomic positions greater than the chromosome size in EPICv2? by Joshua Llano • 0

Thank you for your reply James. I was worried that it was my mistake.

Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Votes

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

Answer: Explannation for ROAST results

A: How DiffBind run PCA based on peak data?

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

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Supporter to bhanu.chandra1 • 0