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snprelate
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480
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Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP
ExomeSeqData
snapcount
SNAData
SNPRelate
18 months ago
m610110001
• 0
0
votes
2
replies
951
views
How to project a new vector onto PCA space using snpgdsPCA( )?
SNPRelate
updated 2.2 years ago by
Stephanie M. Gogarten
▴ 870 • written 2.2 years ago by
MatthaeusCaesar
• 0
0
votes
1
reply
1.1k
views
SNP annotation
SNPRelate
SNP
GWASTools
Annotation
GWASdata
updated 2.3 years ago by
Stephanie M. Gogarten
▴ 870 • written 2.4 years ago by
Adrián
• 0
0
votes
0
replies
812
views
SNPRelate handling of missing genotypes
SNPRelate
2.3 years ago
serpalma.v
▴ 60
0
votes
0
replies
698
views
#SeqSQC error: Problem while converting vcf format to gds format
SNPRelate
gdsfmt
SeqSQC
2.6 years ago
Bhargavi
• 0
0
votes
1
reply
932
views
error when running snpgdsLDpruning: The GDS node "genotype/data" does not exist.
SNPRelate
updated 3.4 years ago by
xiuwen.zheng
• 0 • written 3.4 years ago by
alyssahz
• 0
3
votes
1
reply
1.0k
views
How to add colors to the PCA made using SNPRelate
snprelate
updated 3.6 years ago by
James W. MacDonald
65k • written 3.6 years ago by
zen
• 0
1
vote
1
reply
810
views
What does SNPRelate::snpgdsDiss calculate?
SNPRelate
updated 4.9 years ago by
zhengx
▴ 30 • written 4.9 years ago by
grp2009
• 0
0
votes
1
reply
872
views
Different order of samples in output of snpgdsSlidingWindow to calculate Fst and aggregation method
SNPRelate
updated 5.0 years ago by
zhengx
▴ 30 • written 5.0 years ago by
serpalma.v
▴ 60
1
vote
1
reply
1.6k
views
VCF file does not include snp.id, can I still run SNPRelate for Relatedness Analysis? Data is output from STACKS for mangroves
SNPRelate
VCF
updated 5.1 years ago by
Stephanie M. Gogarten
▴ 870 • written 5.1 years ago by
cav3gh
• 0
1
vote
1
reply
988
views
PCA axis description SNPRelate
SNPRelate
PCA
updated 5.1 years ago by
Stephanie M. Gogarten
▴ 870 • written 5.1 years ago by
serpalma.v
▴ 60
0
votes
1
reply
3.7k
views
SNPrelate, snpgdsFst is excluding all snps on non-autosomes, how can I get it to stop doing that?
snprelate
fst
updated 5.6 years ago by
zhengx
▴ 30 • written 5.6 years ago by
cav3gh
• 0
0
votes
1
reply
910
views
Using previously calculated PCs in GENESIS
genesis
snprelate
5.6 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
1.3k
views
Write gds in parallel
gds
SNPRelate
BiocParallel
updated 6.0 years ago by
zhengx
▴ 30 • written 6.0 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
2
replies
1.6k
views
Error converting vcf to gds
snprelate
vcf
gds
updated 6.1 years ago by
zhengx
▴ 30 • written 6.1 years ago by
annat22
• 0
1
vote
2
replies
1.6k
views
Cannot read plink files correctly
snprelate
Tutorial
updated 6.9 years ago by
zhengx
▴ 30 • written 6.9 years ago by
AR3513
• 0
0
votes
1
reply
1.5k
views
SNPRelate Dendrogram Point Colors and Shapes
SNPRelate
R
updated 7.9 years ago by
zhengx
▴ 30 • written 7.9 years ago by
rfriedman22
• 0
3
votes
2
replies
1.8k
views
Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
snprelate
GWASTools
updated 8.0 years ago by
Adrienne Stilp
▴ 30 • written 8.0 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
9
replies
6.2k
views
unable to update mgcv package
mgcv
snprelate
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
mail2vignesh1985
• 0
0
votes
4
replies
2.4k
views
NA values in snpgdsDiss dissimilarity matrix
snprelate
updated 8.5 years ago by
zhengx
▴ 30 • written 8.5 years ago by
blackgore
▴ 10
0
votes
0
replies
935
views
RADseq chromosomes unknown
snprelate
RADseq
Stacks
8.5 years ago
clive.darwell
• 0
0
votes
0
replies
1.9k
views
GWASTools
Organism
GWASTools
Organism
GWASTools
SNPRelate
11.1 years ago
Stephanie M. Gogarten
▴ 870
22 results • Page
1 of 1
Recent ...
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Comment: EGSEA usage with microarray data (with vooma)?
by
Chris
• 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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Teacher
to
Michael Love
42k
Popular Question
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Haibo Liu
• 0
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HS
▴ 10
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DevelopingHippo
• 0
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Robert Castelo
★ 3.3k
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